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Julie Chih-yu Chen
Julie Chih-yu Chen
National Microbiology Laboratory
Verified email at phac-aspc.gc.ca
Title
Cited by
Cited by
Year
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ...
Nucleic acids research 42 (D1), D142-D147, 2014
11682014
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ...
Nucleic acids research 44 (D1), D110-D115, 2016
11032016
A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?
JD Forbes, C Chen, NC Knox, RA Marrie, H El-Gabalawy, T de Kievit, ...
Microbiome 6 (1), 1-15, 2018
3312018
Deep feature selection: theory and application to identify enhancers and promoters
Y Li, CY Chen, WW Wasserman
Journal of Computational Biology 23 (5), 322-336, 2016
2722016
Proksee: in-depth characterization and visualization of bacterial genomes
JR Grant, E Enns, E Marinier, A Mandal, EK Herman, C Chen, M Graham, ...
Nucleic Acids Research, gkad326, 2023
1502023
Evaluation of a commercially-available surrogate virus neutralization test for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2)
EJ Valcourt, K Manguiat, A Robinson, JCY Chen, K Dimitrova, C Philipson, ...
Diagnostic microbiology and infectious disease 99 (4), 115294, 2021
892021
Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features
C Chen, Q Morris, JA Mitchell
BMC genomics 13 (1), 152, 2012
792012
The identification of cis-regulatory elements: A review from a machine learning perspective
Y Li, C Chen, AM Kaye, WW Wasserman
Biosystems 138, 6-17, 2015
762015
Spread of X-chromosome inactivation into autosomal sequences: role for DNA elements, chromatin features and chromosomal domains
AM Cotton, CY Chen, LL Lam, WW Wasserman, MS Kobor, CJ Brown
Human molecular genetics 23 (5), 1211-1223, 2014
732014
Chronic treatment with aripiprazole induces differential gene expression in the rat frontal cortex
MC Cheng, DL Liao, CA Hsiung, CY Chen, YC Liao, CH Chen
International Journal of Neuropsychopharmacology 11 (2), 207-216, 2008
702008
On the identification of potential regulatory variants within genome wide association candidate SNP sets
C Chen, IS Chang, CA Hsiung, WW Wasserman
BMC medical genomics 7 (1), 34, 2014
652014
YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses
C Chen, W Shi, B Balaton, AM Matthews, Y Li, DJ Arenillas, A Mathelier, ...
Scientific Reports, 2016
412016
Nuclear RNA sequencing of the mouse erythroid cell transcriptome
JA Mitchell, I Clay, D Umlauf, C Chen, CA Moir, CH Eskiw, S Schoenfelder, ...
PloS one 7 (11), e49274, 2012
342012
Detection of antimicrobial resistance using proteomics and the comprehensive antibiotic resistance database: a case study
C Chen, CG Clark, S Langner, DA Boyd, A Bharat, SJ McCorrister, ...
PROTEOMICS–Clinical Applications 14 (4), 1800182, 2020
322020
PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina
JW Hickmott, C Chen, DJ Arenillas, AJ Korecki, SL Lam, LL Molday, ...
Molecular Therapy-Methods & Clinical Development 3, 16051, 2016
242016
Chlamydia evasion of neutrophil host defense results in NLRP3 dependent myeloid-mediated sterile inflammation through the purinergic P2X7 receptor
C Yang, L Lei, JWM Collins, M Briones, L Ma, GL Sturdevant, H Su, ...
Nature communications 12 (1), 1-16, 2021
222021
R432 is a key residue for the multiple functions of Ndt80p in Candida albicans
YL Yang, CW Wang, SN Leaw, IC Wang, CG Chen, JC Fan, KY Tseng, ...
Cellular and Molecular Life Sciences 69 (6), 1011-1023, 2012
172012
Plasmid negative regulation of CPAF expression is Pgp4 independent and restricted to invasive Chlamydia trachomatis Biovars
MJ Patton, CY Chen, C Yang, S McCorrister, C Grant, G Westmacott, ...
MBio 9 (1), 2018
162018
Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data
JC Chen, AD Tyler
Biology Direct 15, 2020
132020
MrBac: a web server for draft metabolic network reconstructions for bacteria
YC Liao, JCY Chen, MH Tsai, YH Tang, FC Chen, CA Hsiung
Bioengineered bugs 2 (5), 284-287, 2011
122011
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Articles 1–20