Pierre-Yves Dupont
Pierre-Yves Dupont
Senior bioinformatician, ESR, NZ
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Fungal endophyte infection of ryegrass reprograms host metabolism and alters development
PY Dupont, CJ Eaton, JJ Wargent, S Fechtner, P Solomon, J Schmid, ...
New Phytologist 208 (4), 1227-1240, 2015
Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus EpichloŽ festucae
DJ Winter, ARD Ganley, CA Young, I Liachko, CL Schardl, PY Dupont, ...
PLoS genetics 14 (10), e1007467, 2018
Host Tissue Environment Directs Activities of an EpichloŽ Endophyte, While It Induces Systemic Hormone and Defense Responses in Its Native Perennial Ryegrass†…
J Schmid, R Day, N Zhang, PY Dupont, MP Cox, CL Schardl, N Minards, ...
Molecular plant-microbe interactions 30 (2), 138-149, 2017
A Core Gene Set Describes the Molecular Basis of Mutualism and Antagonism in EpichloŽ spp.
CJ Eaton, PY Dupont, P Solomon, W Clayton, B Scott, MP Cox
Molecular Plant-Microbe Interactions 28 (3), 218-231, 2015
Genomes of plant-associated Clavicipitaceae
CL Schardl, CA Young, N Moore, N Krom, PY Dupont, J Pan, S Florea, ...
Advances in Botanical Research 70, 291-327, 2014
Genetic diversity of Phytophthora pluvialis, a pathogen of conifers, in New Zealand and the west coast of the United States of America
S Brar, JF Tabima, RL McDougal, PY Dupont, N Feau, RC Hamelin, ...
Plant pathology 67 (5), 1131-1139, 2018
EpichloŽ hybrida, sp. nov., an emerging model system for investigating fungal allopolyploidy
MA Campbell, BA Tapper, WR Simpson, RD Johnson, W Mace, A Ram, ...
Mycologia 109 (5), 715-729, 2017
Complex epigenetic regulation of alkaloid biosynthesis and host interaction by heterochromatin protein I in a fungal endophyte-plant symbiosis
T Chujo, Y Lukito, CJ Eaton, PY Dupont, LJ Johnson, D Winter, MP Cox, ...
Fungal Genetics and Biology 125, 71-83, 2019
Genomic data quality impacts automated detection of lateral gene transfer in fungi
PY Dupont, MP Cox
G3: Genes, Genomes, Genetics 7 (4), 1301-1314, 2017
HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species
W Duchemin, PY Dupont, MA Campbell, ARD Ganley, MP Cox
BMC bioinformatics 16 (1), 8, 2015
Global population genomics of the forest pathogen Dothistroma septosporum reveal chromosome duplications in high dothistromin‐producing strains
RE Bradshaw, AD Sim, P Chettri, PY Dupont, Y Guo, L Hunziker, ...
Molecular plant pathology 20 (6), 784-799, 2019
Functional analysis of RXLR effectors from the New Zealand kauri dieback pathogen Phytophthora agathidicida
Y Guo, PY Dupont, CH Mesarich, B Yang, RL McDougal, P Panda, ...
Molecular plant pathology 21 (9), 1131-1148, 2020
Chromatin‐level regulation of the fragmented dothistromin gene cluster in the forest pathogen Dothistroma septosporum
P Chettri, PY Dupont, RE Bradshaw
Molecular microbiology 107 (4), 508-522, 2018
Isolation and characterization of Clostridium difficile from a small survey of wastewater, food and animals in New Zealand
L Rivas, PY Dupont, BJ Gilpin, AJ Cornelius
Letters in Applied Microbiology 70 (1), 29-35, 2020
DsEcp2-1 is a polymorphic effector that restricts growth of Dothistroma septosporum in pine
Y Guo, L Hunziker, CH Mesarich, P Chettri, PY Dupont, RJ Ganley, ...
Fungal Genetics and Biology 135, 103300, 2020
An outbreak of multiple genotypes of Listeria monocytogenes in New Zealand linked to contaminated ready‐to‐eat meats—a retrospective analysis using whole†…
L Rivas, PY Dupont, M Wilson, M Rohleder, B Gilpin
Letters in Applied Microbiology 69 (6), 392-398, 2019
Reduced Virulence of an Introduced Forest Pathogen over 50 Years
RE Bradshaw, S Ormond, PY Dupont, P Chettri, IK Ozturk, RL McDougal, ...
Microorganisms 7 (10), 420, 2019
Analysis of simple sequence repeat (SSR) structure and sequence within EpichloŽ endophyte genomes reveals impacts on gene structure and insights into†…
W Clayton, CJ Eaton, PY Dupont, T Gillanders, N Cameron, S Saikia, ...
PloS one 12 (9), e0183748, 2017
Evolution of polyketide synthesis in a Dothideomycete forest pathogen
IK Ozturk, P Chettri, PY Dupont, I Barnes, RL McDougal, GG Moore, A Sim, ...
Fungal genetics and biology 106, 42-50, 2017
Computational analysis of the transcriptional regulation of the adenine nucleotide translocator isoform 4 gene and its role in spermatozoid glycolytic metabolism
PY Dupont, G Stepien
Gene 487 (1), 38-45, 2011
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