| ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads M Hunt, AE Mather, L Sánchez-Busó, AJ Page, J Parkhill, JA Keane, ... Microbial genomics 3 (10), e000131, 2017 | 627 | 2017 |
| The novel 2016 WHO Neisseria gonorrhoeae reference strains for global quality assurance of laboratory investigations: phenotypic, genetic and reference genome … M Unemo, D Golparian, L Sánchez-Busó, Y Grad, S Jacobsson, ... Journal of Antimicrobial Chemotherapy 71 (11), 3096-3108, 2016 | 313 | 2016 |
| Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey SR Harris, MJ Cole, G Spiteri, L Sánchez-Busó, D Golparian, ... The Lancet Infectious Diseases 18 (7), 758-768, 2018 | 199 | 2018 |
| Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster N Arora, VJ Schuenemann, G Jäger, A Peltzer, A Seitz, A Herbig, ... Nature microbiology 2 (1), 1-6, 2016 | 183 | 2016 |
| Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history M Coscolla, S Gagneux, F Menardo, C Loiseau, P Ruiz-Rodriguez, ... Microbial genomics 7 (2), 000477, 2021 | 159 | 2021 |
| The impact of antimicrobials on gonococcal evolution L Sánchez-Busó, D Golparian, J Corander, YH Grad, M Ohnishi, ... Nature microbiology 4 (11), 1941-1950, 2019 | 121 | 2019 |
| Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data AL Hicks, N Wheeler, L Sánchez-Busó, JL Rakeman, SR Harris, YH Grad PLoS computational biology 15 (9), e1007349, 2019 | 91 | 2019 |
| Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates L Sánchez-Busó, I Comas, G Jorques, F González-Candelas Nature Genetics 46 (11), 1205-1211, 2014 | 90 | 2014 |
| A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch L Sánchez-Busó, CA Yeats, B Taylor, RJ Goater, A Underwood, ... Genome medicine 13, 1-22, 2021 | 83 | 2021 |
| A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch S Argimón, CA Yeats, RJ Goater, K Abudahab, B Taylor, A Underwood, ... Nature communications 12 (1), 2879, 2021 | 82 | 2021 |
| Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex Á Chiner-Oms, L Sánchez-Busó, J Corander, S Gagneux, SR Harris, ... Science advances 5 (6), eaaw3307, 2019 | 82 | 2019 |
| Genomic evolution of Neisseria gonorrhoeae since the preantibiotic era (1928–2013): antimicrobial use/misuse selects for resistance and drives evolution D Golparian, SR Harris, L Sánchez-Busó, S Hoffmann, WM Shafer, ... BMC genomics 21, 1-13, 2020 | 72 | 2020 |
| Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae KC Ma, TD Mortimer, AL Hicks, NE Wheeler, L Sánchez-Busó, ... Nature communications 11 (1), 4126, 2020 | 67* | 2020 |
| Europe-wide expansion and eradication of multidrug-resistant Neisseria gonorrhoeae lineages: a genomic surveillance study L Sánchez-Busó, MJ Cole, G Spiteri, M Day, S Jacobsson, D Golparian, ... The Lancet Microbe 3 (6), e452-e463, 2022 | 61 | 2022 |
| Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer D Golparian, V Donŕ, L Sánchez-Busó, S Foerster, S Harris, A Endimiani, ... Scientific reports 8 (1), 17596, 2018 | 60 | 2018 |
| Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae KC Ma, TD Mortimer, MA Duckett, AL Hicks, NE Wheeler, L Sánchez-Busó, ... Nature communications 11 (1), 5374, 2020 | 54* | 2020 |
| Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila S David, L Sánchez-Busó, SR Harris, P Marttinen, C Rusniok, ... PLoS Genetics 13 (6), e1006855, 2017 | 52 | 2017 |
| Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches ID Otchere, M Coscollá, L Sánchez-Busó, A Asante-Poku, D Brites, ... Scientific reports 8 (1), 11269, 2018 | 49 | 2018 |
| European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures HMB Seth-Smith, LS Busó, M Livingstone, M Sait, SR Harris, KD Aitchison, ... BMC genomics 18, 1-10, 2017 | 48 | 2017 |
| High susceptibility to zoliflodacin and conserved target (GyrB) for zoliflodacin among 1209 consecutive clinical Neisseria gonorrhoeae isolates from 25 European … M Unemo, J Ahlstrand, L Sánchez-Busó, M Day, D Aanensen, ... Journal of Antimicrobial Chemotherapy 76 (5), 1221-1228, 2021 | 46 | 2021 |
Simon R. HarrisSenior Program Officer, Bill & Melinda Gates FoundationVerified email at sanger.ac.uk
