Roman Volodymyr Briskine
Roman Volodymyr Briskine
Science IT Consultant, Universität Zürich
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Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula
A Branca, TD Paape, P Zhou, R Briskine, AD Farmer, J Mudge, AK Bharti, ...
Proceedings of the National Academy of Sciences 108 (42), E864-E870, 2011
Epigenetic and genetic influences on DNA methylation variation in maize populations
SR Eichten, R Briskine, J Song, Q Li, R Swanson-Wagner, PJ Hermanson, ...
The Plant Cell 25 (8), 2783-2797, 2013
Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula
J Stanton-Geddes, T Paape, B Epstein, R Briskine, J Yoder, J Mudge, ...
PLoS ONE 8 (5), e65688, 2013
Genomic signature of adaptation to climate in Medicago truncatula
JB Yoder, J Stanton-Geddes, P Zhou, R Briskine, ND Young, P Tiffin
Genetics 196 (4), 1263-1275, 2014
Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays
RS Sekhon, R Briskine, CN Hirsch, CL Myers, NM Springer, CR Buell, ...
PloS one 8 (4), e61005, 2013
Reshaping of the maize transcriptome by domestication
R Swanson-Wagner, R Briskine, R Schaefer, MB Hufford, J Ross-Ibarra, ...
Proceedings of the National Academy of Sciences 109 (29), 11878-11883, 2012
Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology
RV Briskine, T Paape, R Shimizu‐Inatsugi, T Nishiyama, S Akama, J Sese, ...
Molecular Ecology Resources, 2016
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity
X Gan, A Hay, M Kwantes, G Haberer, A Hallab, RD Ioio, H Hofhuis, ...
Nature Plants 2, 16167, 2016
Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27
I Makarevitch, SR Eichten, R Briskine, AJ Waters, ON Danilevskaya, ...
The Plant Cell 25 (3), 780-793, 2013
High‐density genome‐wide association mapping implicates an F‐box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches
M Bonhomme, O André, Y Badis, J Ronfort, C Burgarella, N Chantret, ...
New Phytologist 201 (4), 1328-1342, 2014
Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae
B Epstein, A Branca, J Mudge, AK Bharti, R Briskine, AD Farmer, ...
PLoS Genet 8 (8), e1002868-e1002868, 2012
Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome
T Paape, P Zhou, A Branca, R Briskine, N Young, P Tiffin
Genome biology and evolution 4 (5), 726-737, 2012
Phylogenetic signal variation in the genomes of Medicago (Fabaceae)
JB Yoder, R Briskine, J Mudge, A Farmer, T Paape, K Steele, GD Weiblen, ...
Systematic biology 62 (3), 424-438, 2013
Selection, genome‐wide fitness effects and evolutionary rates in the model legume Medicago truncatula
T Paape, T Bataillon, P Zhou, T JY Kono, R Briskine, ND Young, P Tiffin
Molecular ecology 22 (13), 3525-3538, 2013
Estimating heritability using genomic data
J Stanton‐Geddes, JB Yoder, R Briskine, ND Young, P Tiffin
Methods in Ecology and Evolution 4 (12), 1151-1158, 2013
Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica
T Paape, RV Briskine, G Halstead-Nussloch, HEL Lischer, ...
Nature communications 9 (1), 3909, 2018
Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias
L Li, R Briskine, R Schaefer, PS Schnable, CL Myers, LE Flagel, ...
BMC Genomics 17 (1), 875, 2016
Discovering functional modules across diverse maize transcriptomes using COB, the co-expression browser
RJ Schaefer, R Briskine, NM Springer, CL Myers
PLoS ONE 9 (6), e99193, 2014
Fine‐scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species
R Akiyama, J Sun, M Hatakeyama, HEL Lischer, RV Briskine, A Hay, ...
New Phytologist 229 (6), 3587-3601, 2021
Positional bias in variant calls against draft reference assemblies
RV Briskine, KK Shimizu
BMC Genomics 18 (1), 263, 2017
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