Jane Hawkey
Jane Hawkey
Monash University, Department of Infectious Diseases
Verified email at
Cited by
Cited by
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ...
Nature genetics 47 (6), 632-639, 2015
Genome-scale rates of evolutionary change in bacteria
S Duchêne, KE Holt, FX Weill, S Le Hello, J Hawkey, DJ Edwards, ...
Microbial genomics 2 (11), e000094, 2016
Trycycler: consensus long-read assemblies for bacterial genomes
RR Wick, LM Judd, LT Cerdeira, J Hawkey, G Méric, B Vezina, KL Wyres, ...
Genome biology 22, 1-17, 2021
Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307
K Wyres, J Hawkey, M Hetland, A Fostervold, R Wick, L Judd, M Hamidian, ...
Journal of Antimicrobial Chemotherapy 74 (3), 577–581, 2019
An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid
VK Wong, S Baker, TR Connor, D Pickard, AJ Page, J Dave, N Murphy, ...
Nature communications 7 (1), 12827, 2016
ISMapper: Identifying insertion sequences in bacterial genomes from short read sequence data
J Hawkey, M Hamidian, RR Wick, DJ Edwards, H Billman-Jacobe, ...
BMC Genomics 16 (1), 667, 2015
Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198
J Hawkey, S Le Hello, B Doublet, SA Granier, RS Hendriksen, WF Fricke, ...
Microbial genomics 5 (7), e000269, 2019
Global phylogeography and evolutionary history of Shigella dysenteriae type 1
E Njamkepo, N Fawal, A Tran-Dien, J Hawkey, N Strockbine, C Jenkins, ...
Nature microbiology 1 (4), 1-10, 2016
Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection
J Hawkey, DB Ascher, LM Judd, RR Wick, X Kostoulias, H Cleland, ...
Microbial genomics 4 (3), e000165, 2018
Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm
J Hawkey, DJ Edwards, K Dimovski, L Hiley, H Billman-Jacobe, G Hogg, ...
BMC genomics 14, 1-15, 2013
Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward
MB Schultz, D Pham Thanh, N Tran Do Hoan, RR Wick, DJ Ingle, ...
Microbial genomics 2 (3), e000050, 2016
Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii
CJ Boinett, AK Cain, J Hawkey, NT Do Hoang, NNT Khanh, DP Thanh, ...
Microbial genomics 5 (2), e000246, 2019
Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of …
M Hamidian, J Hawkey, R Wick, KE Holt, RM Hall
Microbial genomics 5 (1), e000242, 2019
Impact of insertion sequences on convergent evolution of Shigella species
J Hawkey, JM Monk, H Billman-Jacobe, B Palsson, KE Holt
PLoS genetics 16 (7), e1008931, 2020
Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs
RM Colquhoun, MB Hall, L Lima, LW Roberts, KM Malone, M Hunt, ...
Genome biology 22, 1-30, 2021
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
J Hawkey, K Paranagama, KS Baker, RJ Bengtsson, FX Weill, ...
Nature communications 12 (1), 2684, 2021
Silent spread of mobile colistin resistance gene mcr-9.1 on IncHI2 ‘superplasmids’ in clinical carbapenem-resistant Enterobacterales
N Macesic, LV Blakeway, JD Stewart, J Hawkey, KL Wyres, LM Judd, ...
Clinical Microbiology and Infection 27 (12), 1856. e7-1856. e13, 2021
ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting
J Hawkey, KL Wyres, LM Judd, T Harshegyi, L Blakeway, RR Wick, ...
Genome Medicine 14 (1), 97, 2022
Species interactions constrain adaptation and preserve ecological stability in an experimental microbial community
JN Barber, LC Nicholson, LC Woods, LM Judd, AL Sezmis, J Hawkey, ...
The ISME Journal 16 (5), 1442-1452, 2022
Genome sequence of Acinetobacter baumannii strain A1, an early example of antibiotic-resistant global clone 1
KE Holt, M Hamidian, JJ Kenyon, MT Wynn, J Hawkey, D Pickard, ...
Genome announcements 3 (2), 10.1128/genomea. 00032-15, 2015
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