Follow
Nicola Felix Müller
Nicola Felix Müller
Univiersity of California San Francisco
Verified email at ucsf.edu - Homepage
Title
Cited by
Cited by
Year
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
29962019
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
2992020
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
1092018
The Structured Coalescent and its Approximations
NF Müller, DA Rasmussen, T Stadler
Molecular Biology and Evolution 34 (11), 2970–2981, 2017
1072017
Regulatory mechanisms underlying coordination of amino acid and glucose catabolism in Escherichia coli
M Zampieri, M Hörl, F Hotz, NF Müller, U Sauer
Nature communications 10 (1), 3354, 2019
1022019
MASCOT: Parameter and state inference under the marginal structured coalescent approximation
NF Müller, D Rasmussen, T Stadler
Bioinformatics 34 (22), 3843–3848, 2018
992018
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State
NF Mueller, C Wagner, CD Frazar, P Roychoudhury, J Lee, LH Moncla, ...
Science Translational Medicine, 2021
85*2021
Adaptive Metropolis-coupled MCMC for BEAST 2
NF Müller, RR Bouckaert
PeerJ 8, e9473, 2020
70*2020
A Bayesian approach to infer recombination patterns in coronaviruses
NF Müller, KE Kistler, T Bedford
Nature Communications 13 (1), 1-9, 2022
47*2022
Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses
NF Müller, U Stolz, G Dudas, T Stadler, TG Vaughan
Proceedings of the National Academy of Sciences 117 (29), 17104-17111, 2020
432020
Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations
NF Müller, G Dudas, T Stadler
Virus Evolution 5 (2), vez030, 2019
292019
Genomic analysis of nCoV spread
T Bedford, R Neher, J Hadfield, E Hodcroft, M Ilcisin, N Müller
Situation report 2020-01-23. https://nextstrain. org/narratives/ncov/sit-rep …, 2020
25*2020
Impact and mitigation of sampling bias to determine viral spread: evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations
M Layan, NF Müller, S Dellicour, N De Maio, H Bourhy, S Cauchemez, ...
Virus Evolution 9 (1), vead010, 2023
232023
Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration
J Yang, NF Müller, R Bouckaert, B Xu, AJ Drummond
PLoS computational biology 15 (8), e1007189, 2019
222019
Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics
NF Müller, D Wüthrich, N Goldman, N Sailer, C Saalfrank, M Brunner, ...
PLoS pathogens 16 (11), e1008984, 2020
212020
State-dependent evolutionary models reveal modes of solid tumour growth
MA Lewinsohn, T Bedford, NF Müller, AF Feder
Nature Ecology & Evolution 7 (4), 581-596, 2023
192023
Joint inference of species histories and gene flow
NF Mueller, H Ogilvie, C Zhang, MC Fontaine, JE Amaya-Romero, ...
bioRxiv, 348391, 2021
172021
Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State
LH Moncla, A Black, C DeBolt, M Lang, NR Graff, AC Pérez-Osorio, ...
Elife 10, e66448, 2021
162021
Evaluation of two workflows for whole genome sequencing-based typing of influenza A viruses
D Wüthrich, D Lang, NF Müller, RA Neher, T Stadler, A Egli
Journal of virological methods 266, 30-33, 2019
102019
Joint inference of migration and reassortment patterns for viruses with segmented genomes
U Stolz, T Stadler, NF Müller, TG Vaughan
Molecular biology and evolution 39 (1), msab342, 2022
92022
The system can't perform the operation now. Try again later.
Articles 1–20