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Carson Andorf
Carson Andorf
Computational Biologist, USDA-ARS
Verified email at iastate.edu
Title
Cited by
Cited by
Year
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ...
Science 373 (6555), 655-662, 2021
3432021
MaizeGDB 2018: the maize multi-genome genetics and genomics database
JL Portwood, MR Woodhouse, EK Cannon, JM Gardiner, LC Harper, ...
Nucleic acids research 47 (D1), D1146-D1154, 2019
2672019
MaizeGDB update: new tools, data and interface for the maize model organism database
CM Andorf, EK Cannon, JL Portwood, JM Gardiner, LC Harper, ...
Nucleic acids research 44 (D1), D1195-D1201, 2016
2162016
The maize W22 genome provides a foundation for functional genomics and transposon biology
NM Springer, SN Anderson, CM Andorf, KR Ahern, F Bai, O Barad, ...
Nature genetics 50 (9), 1282-1288, 2018
1992018
Technological advances in maize breeding: past, present and future
C Andorf, WD Beavis, M Hufford, S Smith, WP Suza, K Wang, ...
Theoretical and applied genetics 132, 817-849, 2019
1442019
A pan-genomic approach to genome databases using maize as a model system
MR Woodhouse, EK Cannon, JL Portwood, LC Harper, JM Gardiner, ...
BMC plant biology 21, 1-10, 2021
1292021
Maize GO annotation—methods, evaluation, and review (maize‐GAMER)
K Wimalanathan, I Friedberg, CM Andorf, CJ Lawrence‐Dill
Plant direct 2 (4), e00052, 2018
1082018
The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps
CM Andorf, CJ Lawrence, LC Harper, ML Schaeffer, DA Campbell, ...
Bioinformatics 26 (3), 434-436, 2010
1072010
MaizeGDB: curation and outreach go hand-in-hand
ML Schaeffer, LC Harper, JM Gardiner, CM Andorf, DA Campbell, ...
Database 2011, bar022, 2011
952011
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
L Harper, J Campbell, EKS Cannon, S Jung, M Poelchau, R Walls, ...
Database 2018, bay088, 2018
762018
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
N Manchanda, JL Portwood, MR Woodhouse, AS Seetharam, ...
BMC genomics 21 (1), 1-9, 2020
692020
Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning
N Zhou, ZD Siegel, S Zarecor, N Lee, DA Campbell, CM Andorf, ...
PLoS computational biology 14 (7), e1006337, 2018
672018
G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient …
CM Andorf, M Kopylov, D Dobbs, KE Koch, ME Stroupe, CJ Lawrence, ...
Journal of Genetics and Genomics 41 (12), 627-647, 2014
602014
MaizeGDB becomes ‘sequence-centric’
TZ Sen, CM Andorf, ML Schaeffer, LC Harper, ME Sparks, J Duvick, ...
Database 2009, bap020, 2009
562009
Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes
MY Law, KL Childs, MS Campbell, JC Stein, AJ Olson, C Holt, N Panchy, ...
Plant physiology 167 (1), 25-39, 2015
552015
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach
C Andorf, D Dobbs, V Honavar
BMC bioinformatics 8, 1-12, 2007
522007
Choosing a genome browser for a Model Organism Database: surveying the maize community
TZ Sen, LC Harper, ML Schaeffer, CM Andorf, TE Seigfried, DA Campbell, ...
Database 2010, baq007, 2010
512010
Information integration and knowledge acquisition from semantically heterogeneous biological data sources
D Caragea, J Pathak, J Bao, A Silvescu, C Andorf, D Dobbs, V Honavar
International Workshop on Data Integration in the Life Sciences, 175-190, 2005
482005
Haplotype structure in commercial maize breeding programs in relation to key founder lines
SM Coffman, MB Hufford, CM Andorf, T Lübberstedt
Theoretical and Applied Genetics 133, 547-561, 2020
382020
FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences
S Banerjee, P Bhandary, M Woodhouse, TZ Sen, RP Wise, CM Andorf
BMC bioinformatics 22, 1-26, 2021
342021
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