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Huw Alexander Ogilvie
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
29362019
StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates
HA Ogilvie, RR Bouckaert, AJ Drummond
Molecular biology and evolution 34 (8), 2101-2114, 2017
4472017
The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula
N Imin, NA Mohd-Radzman, HA Ogilvie, MA Djordjevic
Journal of Experimental Botany 64 (17), 5395-5409, 2013
2122013
Bayesian inference of species networks from multilocus sequence data
C Zhang, HA Ogilvie, AJ Drummond, T Stadler
Molecular biology and evolution 35 (2), 504-517, 2018
1832018
Computational performance and statistical accuracy of* BEAST and comparisons with other methods
HA Ogilvie, J Heled, D Xie, AJ Drummond
Systematic biology 65 (3), 381-396, 2016
1192016
Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides
E Thynne, IML Saur, J Simbaqueba, HA Ogilvie, Y Gonzalez‐Cendales, ...
Molecular plant pathology 18 (6), 811-824, 2017
1012017
Advances in computational methods for phylogenetic networks in the presence of hybridization
RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh
Bioinformatics and phylogenetics: seminal contributions of Bernard Moret …, 2019
902019
Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes
HA Ogilvie, N Imin, MA Djordjevic
BMC genomics 15, 1-15, 2014
802014
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ...
Genome research 31 (4), 635-644, 2021
55*2021
CEP–CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth
K Chapman, M Taleski, HA Ogilvie, N Imin, MA Djordjevic
Journal of Experimental Botany 70 (15), 3955-3967, 2019
502019
microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
RP Eyles, PH Williams, SJ Ohms, GF Weiller, HA Ogilvie, MA Djordjevic, ...
Planta 238, 91-105, 2013
372013
Practical Aspects of Phylogenetic Network Analysis Using PhyloNet
Z Cao, X Liu, HA Ogilvie, Z Yan, L Nakhleh
Species Tree Inference: A Guide to Methods and Applications, 89-119, 2023
30*2023
A divide-and-conquer method for scalable phylogenetic network inference from multilocus data
J Zhu, X Liu, HA Ogilvie, LK Nakhleh
Bioinformatics 35 (14), i370-i378, 2019
212019
Novel integrative modeling of molecules and morphology across evolutionary timescales
HA Ogilvie, FK Mendes, TG Vaughan, NJ Matzke, T Stadler, D Welch, ...
Systematic Biology 71 (1), 208-220, 2022
19*2022
Maximum parsimony inference of phylogenetic networks in the presence of polyploid complexes
Z Yan, Z Cao, Y Liu, HA Ogilvie, L Nakhleh
Systematic Biology 71 (3), 706-720, 2022
172022
Joint inference of species histories and gene flow
NF Müller, HA Ogilvie, C Zhang, MC Fontaine, JE Amaya-Romero, ...
bioRxiv, 348391, 2021
172021
Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology
AC Afonso Silva, N Santos, HA Ogilvie, C Moritz
PeerJ 5, e3724, 2017
152017
Unifying gene duplication, loss, and coalescence on phylogenetic networks
P Du, HA Ogilvie, L Nakhleh
International Symposium on Bioinformatics Research and Applications, 40-51, 2019
142019
Phylogenomic assessment of the role of hybridization and introgression in trait evolution
Y Wang, Z Cao, HA Ogilvie, L Nakhleh
PLoS genetics 17 (8), e1009701, 2021
102021
NestedBD: Bayesian inference of phylogenetic trees from single-cell copy number profiles under a birth-death model
Y Liu, M Edrisi, Z Yan, H A Ogilvie, L Nakhleh
Algorithms for Molecular Biology 19 (1), 18, 2024
6*2024
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Articles 1–20