| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 463 | 2019 |
| StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates HA Ogilvie, RR Bouckaert, AJ Drummond Molecular biology and evolution 34 (8), 2101-2114, 2017 | 198 | 2017 |
| The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula N Imin, NA Mohd-Radzman, HA Ogilvie, MA Djordjevic Journal of Experimental Botany 64 (17), 5395-5409, 2013 | 114 | 2013 |
| Computational performance and statistical accuracy of* BEAST and comparisons with other methods HA Ogilvie, J Heled, D Xie, AJ Drummond Systematic biology 65 (3), 381-396, 2016 | 84 | 2016 |
| Bayesian inference of species networks from multilocus sequence data C Zhang, HA Ogilvie, AJ Drummond, T Stadler Molecular biology and evolution 35 (2), 504-517, 2018 | 78 | 2018 |
| Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides E Thynne, IML Saur, J Simbaqueba, HA Ogilvie, Y Gonzalez‐Cendales, ... Molecular plant pathology 18 (6), 811-824, 2017 | 48 | 2017 |
| Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes HA Ogilvie, N Imin, MA Djordjevic BMC genomics 15 (1), 1-15, 2014 | 38 | 2014 |
| Advances in computational methods for phylogenetic networks in the presence of hybridization RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh Bioinformatics and Phylogenetics, 317-360, 2019 | 27 | 2019 |
| microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula RP Eyles, PH Williams, SJ Ohms, GF Weiller, HA Ogilvie, MA Djordjevic, ... Planta 238 (1), 91-105, 2013 | 27 | 2013 |
| A divide-and-conquer method for scalable phylogenetic network inference from multilocus data J Zhu, X Liu, HA Ogilvie, LK Nakhleh Bioinformatics 35 (14), i370-i378, 2019 | 11 | 2019 |
| Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology ACA Silva, N Santos, HA Ogilvie, C Moritz PeerJ 5, e3724, 2017 | 11 | 2017 |
| CEP–CEPR1 signalling inhibits the sucrose-dependent enhancement of lateral root growth K Chapman, M Taleski, HA Ogilvie, N Imin, MA Djordjevic Journal of experimental botany 70 (15), 3955-3967, 2019 | 10 | 2019 |
| Inferring species trees using integrative models of species evolution HA Ogilvie, TG Vaughan, NJ Matzke, GJ Slater, T Stadler, D Welch, ... bioRxiv, 242875, 2018 | 8 | 2018 |
| Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ... BioRxiv, 2020 | 7 | 2020 |
| Unifying gene duplication, loss, and coalescence on phylogenetic networks P Du, HA Ogilvie, L Nakhleh International Symposium on Bioinformatics Research and Applications, 40-51, 2019 | 7 | 2019 |
| Inference of species histories in the presence of gene flow NF Müller, HA Ogilvie, C Zhang, A Drummond, T Stadler bioRxiv, 348391, 2018 | 5 | 2018 |
| Practical aspects of phylogenetic network analysis using phylonet Z Cao, X Liu, HA Ogilvie, Z Yan, L Nakhleh bioRxiv, 746362, 2019 | 3 | 2019 |
| Phylogenomic assessment of the role of hybridization and introgression in trait evolution Y Wang, Z Cao, HA Ogilvie, L Nakhleh bioRxiv, 2020 | 2 | 2020 |
| Practical speedup of bayesian inference of species phylogenies by restricting the space of gene trees Y Wang, HA Ogilvie, L Nakhleh Molecular biology and evolution 37 (6), 1809-1818, 2020 | 1 | 2020 |
| Bayes Factor Delimitation of Species (* with genomic data; BFD*): A Tutorial and Worked Example A Leaché, HA Ogilvie | 1 | 2016 |
Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
