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David A Rasmussen
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
29962019
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
EWMGHTJESRLDCDPMDARARNZAKSASOAKSAPASKAMOAOOOAHAAAASAEOOAENAAAFVAKAGAJTAAYAKK ...
Science 374 (6566), 423-431, 2021
1962021
Inference for nonlinear epidemiological models using genealogies and time series
DA Rasmussen, O Ratmann, K Koelle
PLoS computational biology 7 (8), e1002136, 2011
1882011
Sunflower domestication alleles support single domestication center in eastern North America
BK Blackman, M Scascitelli, NC Kane, HH Luton, DA Rasmussen, RA Bye, ...
Proceedings of the National Academy of Sciences 108 (34), 14360-14365, 2011
1512011
Phylodynamic inference for structured epidemiological models
DA Rasmussen, EM Volz, K Koelle
PLoS computational biology 10 (4), e1003570, 2014
1182014
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
1092018
Aphid Transmission of Potyvirus: The Largest Plant-Infecting RNA Virus Genus
KR Gadhave, S Gautam, DA Rasmussen, R Srinivasan
Viruses 12 (7), 773, 2020
1082020
The structured coalescent and its approximations
NF Müller, DA Rasmussen, T Stadler
Molecular biology and evolution 34 (11), 2970-2981, 2017
1072017
Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data
T Stadler, D Kühnert, DA Rasmussen, L du Plessis
PLoS currents 6, 2014
1062014
Contributions of flowering time genes to sunflower domestication and improvement
BK Blackman, DA Rasmussen, JL Strasburg, AR Raduski, JM Burke, ...
Genetics 187 (1), 271-287, 2011
1012011
One size fits all? Molecular evidence for a commonly inherited petal identity program in Ranunculales
DA Rasmussen, EM Kramer, EA Zimmer
American Journal of Botany 96 (1), 96-109, 2009
1002009
MASCOT: parameter and state inference under the marginal structured coalescent approximation
NF Müller, D Rasmussen, T Stadler
Bioinformatics 34 (22), 3843-3848, 2018
992018
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ...
Science 378 (6615), eabq5358, 2022
962022
The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans
K Koelle, DA Rasmussen
Elife 4, e07361, 2015
772015
What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)
DA Rasmussen, MAF Noor
Bmc Genomics 10, 1-9, 2009
752009
Phylogenetic tools for generalized HIV-1 epidemics: findings from the PANGEA-HIV methods comparison
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, ...
Molecular biology and evolution 34 (1), 185-203, 2017
712017
Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam
DA Rasmussen, MF Boni, K Koelle
Molecular Biology and Evolution 31 (2), 258-271, 2014
602014
Rates of coalescence for common epidemiological models at equilibrium
K Koelle, DA Rasmussen
Journal of the Royal Society Interface 9 (70), 997-1007, 2012
532012
Estimating epidemic incidence and prevalence from genomic data
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ...
Molecular biology and evolution 36 (8), 1804-1816, 2019
522019
Porcine reproductive and respiratory syndrome virus dissemination across pig production systems in the United States
M Jara, DA Rasmussen, CA Corzo, G Machado
Transboundary and Emerging Diseases 68 (2), 667-683, 2021
402021
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Articles 1–20