Nicole E Wheeler
Nicole E Wheeler
Data Scientist, Wellcome Sanger Institute
Verified email at sanger.ac.uk
TitleCited byYear
Convergent regulatory evolution and loss of flight in paleognathous birds
TB Sackton, P Grayson, A Cloutier, Z Hu, JS Liu, NE Wheeler, PP Gardner, ...
Science 364 (6435), 74-78, 2019
39*2019
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
S Lindgreen, SU Umu, ASW Lai, H Eldai, W Liu, S McGimpsey, ...
PLoS computational biology 10 (10), 2014
322014
Why so narrow: distribution of anti-sense regulated, type I toxin-antitoxin systems compared with type II and type III systems
DS Coray, NE Wheeler, JA Heinemann, PP Gardner
RNA biology 14 (3), 275-280, 2017
162017
Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica
NE Wheeler, PP Gardner, L Barquist
PLoS genetics 14 (5), 2018
152018
A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes
NE Wheeler, L Barquist, RA Kingsley, PP Gardner
Bioinformatics 32 (23), 3566-3574, 2016
142016
Breaking the code of antibiotic resistance
SW Lo, N Kumar, NE Wheeler
Nature Reviews Microbiology 16 (5), 262-262, 2018
72018
Convergent regulatory evolution and the origin of flightlessness in palaeognathous birds. bioRxiv [Internet]: 262584
TB Sackton, P Grayson, A Cloutier, Z Hu, JS Liu, NE Wheeler, PP Gardner, ...
72018
Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis
JA Lees, B Ferwerda, PHC Kremer, NE Wheeler, MV Serón, NJ Croucher, ...
Nature communications 10 (1), 1-14, 2019
62019
Tracing outbreaks with machine learning
NE Wheeler
Nature Reviews Microbiology 17 (5), 269, 2019
42019
An African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation
S Van Puyvelde, D Pickard, K Vandelannoote, E Heinz, B Barbé, ...
Nature communications 10 (1), 1-12, 2019
22019
Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data
AL Hicks, N Wheeler, L Sánchez-Busó, JL Rakeman, SR Harris, YH Grad
PLoS computational biology 15 (9), e1007349, 2019
22019
Genomic, transcriptomic, and phenotypic analyses of Neisseria meningitidis isolates from disease patients and their household contacts
X Ren, DA Eccles, GA Greig, J Clapham, NE Wheeler, S Lindgreen, ...
MSystems 2 (6), e00127-17, 2017
22017
We are falling behind on TB elimination targets: can whole-genome sequencing guide our efforts?
N Wheeler
Thorax 74 (9), 833-834, 2019
12019
Increased antibiotic susceptibility in Neisseria gonorrhoeae through adaptation to the cervical environment
KC Ma, TD Mortimer, AL Hicks, NE Wheeler, L Sánchez-Busó, ...
bioRxiv, 2020
2020
MYCOBACTERIUM ABSCESSUS POINT SOURCE OUTBREAK IN THE LOCAL POTABLE WATER SUPPLY AFFECTING PEOPLE WITH CYSTIC FIBROSIS
RE Stockwell, R Thomson, LE Leong, NE Wheeler, J Bryant, ME Wood, ...
Pediatric Pulmonology 54, S300-S300, 2019
2019
POTABLE WATER AS A POSSIBLE SOURCE OF MYCOBACTERIUM ABSCESSUS INFECTION IN PEOPLE WITH CHRONIC LUNG CONDITIONS
R Stockwell, L Leong, N Wheeler, J Bryant, M Wood, L Sherrard, ...
RESPIROLOGY 24, 42-42, 2019
2019
Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni
NE Wheeler, T Blackmore, AD Reynolds, AC Midwinter, J Marshall, ...
Microbial genomics 5 (2), 2019
2019
Improved inference and prediction of bacterial genotype-phenotype associations using pangenome-spanning regressions
JA Lees, TT Mai, M Galardini, NE Wheeler, J Corander
BioRxiv, 852426, 2019
2019
Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation
M Bawn, G Thilliez, M Kirkwood, N Wheeler, L Petrovska, TJ Dallman, ...
bioRxiv, 804674, 2019
2019
Contrasting approaches to genome-wide association studies impact the detection of resistance mechanisms in Staphylococcus aureus
NE Wheeler, S Reuter, C Chewapreecha, JA Lees, B Blane, C Horner, ...
BioRxiv, 758144, 2019
2019
The system can't perform the operation now. Try again later.
Articles 1–20