Usman Roshan
Usman Roshan
Associate Professor, Department of Computer Science, New Jersey Institute of Technology
Verified email at - Homepage
Cited by
Cited by
Probalign: multiple sequence alignment using partition function posterior probabilities
U Roshan, DR Livesay
Bioinformatics 22 (22), 2715-2721, 2006
Diametrical clustering for identifying anti-correlated gene clusters
IS Dhillon, EM Marcotte, U Roshan
Bioinformatics 19 (13), 1612-1619, 2003
Rec-I-DCM3: a fast algorithmic technique for reconstructing phylogenetic trees
UW Roshan, T Warnow, BME Moret, TL Williams
Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004 …, 2004
Designing fast converging phylogenetic methods
L Nakhleh, U Roshan, K St. John, J Sun, T Warnow
Bioinformatics 17 (suppl_1), S190-S198, 2001
Sequence-length requirements for phylogenetic methods
BME Moret, U Roshan, T Warnow
International Workshop on Algorithms in Bioinformatics, 343-356, 2002
Performance of supertree methods on various data set decompositions
U Roshan, BME Moret, TL Williams, T Warnow
Phylogenetic Supertrees, 301-328, 2004
The accuracy of fast phylogenetic methods for large datasets
L Nakhleh, BME Moret, U Roshan, K St. John, J Sun, T Warnow
Biocomputing 2002, 211-222, 2001
Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest
U Roshan, S Chikkagoudar, Z Wei, K Wang, H Hakonarson
Nucleic acids research 39 (9), e62-e62, 2011
Computational grand challenges in assembling the tree of life: Problems and solutions
DA Bader, U Roshan, A Stamatakis
Advances in computers 68, 127-176, 2006
A multi-path 2.5 dimensional convolutional neural network system for segmenting stroke lesions in brain MRI images
Y Xue, FG Farhat, O Boukrina, AM Barrett, JR Binder, UW Roshan, ...
NeuroImage: Clinical 25, 102118, 2020
Structural and evolutionary considerations for multiple sequence alignment of RNA, and the challenges for algorithms that ignore them
KM Kjer, U Roshan, JJ Gillespie
Reconstruction of large phylogenetic trees: a parallel approach
Z Du, F Lin, UW Roshan
Computational Biology and Chemistry 29 (4), 273-280, 2005
The relationship between maximum parsimony scores and phylogenetic tree topologies
TL Williams, BMT Berger-Wolf, U Roshan, T Warnow
Personal Communication, 2004
Parallel divide-and-conquer phylogeny reconstruction by maximum likelihood
Z Du, A Stamatakis, F Lin, U Roshan, L Nakhleh
International Conference on High Performance Computing and Communications …, 2005
The performance of phylogenetic methods on trees of bounded diameter
L Nakhleh, U Roshan, KS John, J Sun, T Warnow
International Workshop on Algorithms in Bioinformatics, 214-226, 2001
Vessel lumen segmentation in internal carotid artery ultrasounds with deep convolutional neural networks
M Xie, Y Li, Y Xue, R Shafritz, SA Rahimi, JW Ady, UW Roshan
2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019
Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees
U Roshan, DR Livesay, S Chikkagoudar
Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06), 159-164, 2006
Stochastic coordinate descent for 01 loss and its sensitivity to adversarial attacks
M Xie, Y Xue, U Roshan
2019 18th IEEE International Conference On Machine Learning And Applications …, 2019
Brain tumor classification with tumor segmentations and a dual path residual convolutional neural network from MRI and pathology images
Y Xue, Y Yang, FG Farhat, FY Shih, O Boukrina, AM Barrett, JR Binder, ...
International MICCAI brainlesion workshop, 360-367, 2019
MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence
T Turki, U Roshan
BMC genomics 15 (1), 1-14, 2014
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