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John Pinney
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A unique dual activity amino acid hydroxylase in Toxoplasma gondii
EA Gaskell, JE Smith, JW Pinney, DR Westhead, GA McConkey
PloS one 4 (3), e4801, 2009
3702009
Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6
JD Humphries, A Byron, MD Bass, SE Craig, JW Pinney, D Knight, ...
Science signaling 2 (87), ra51-ra51, 2009
2882009
Low-complexity regions within protein sequences have position-dependent roles
A Coletta, JW Pinney, DYW Solís, J Marsh, SR Pettifer, TK Attwood
BMC systems biology 4, 1-13, 2010
2682010
Protein-protein interaction networks and biology—what's the connection?
L Hakes, JW Pinney, DL Robertson, SC Lovell
Nature biotechnology 26 (1), 69-72, 2008
2652008
All duplicates are not equal: the difference between small-scale and genome duplication
L Hakes, JW Pinney, SC Lovell, SG Oliver, DL Robertson
Genome biology 8, 1-13, 2007
2242007
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis
IW Manfield, CH Jen, JW Pinney, I Michalopoulos, JR Bradford, ...
Nucleic acids research 34 (suppl_2), W504-W509, 2006
1852006
Short Communication: Cataloguing the HIV Type 1 Human Protein Interaction Network
RG Ptak, W Fu, BE Sanders-Beer, JE Dickerson, JW Pinney, ...
AIDS research and human retroviruses 24 (12), 1497-1502, 2008
1742008
Petri Net representations in systems biology
JW Pinney, DR Westhead, GA McConkey
Biochemical Society Transactions 31 (6), 1513-1515, 2003
1742003
Protein–protein interactions in virus–host systems
AF Brito, JW Pinney
Frontiers in microbiology 8, 1557, 2017
1532017
metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
JW Pinney, MW Shirley, GA McConkey, DR Westhead
Nucleic acids research 33 (4), 1399-1409, 2005
1422005
HIV–host interactions: a map of viral perturbation of the host system
JW Pinney, JE Dickerson, W Fu, BE Sanders-Beer, RG Ptak, ...
Aids 23 (5), 549-554, 2009
1182009
Bioinformatic analysis of the neprilysin (M13) family of peptidases reveals complex evolutionary and functional relationships
ND Bland, JW Pinney, JE Thomas, AJ Turner, RE Isaac
BMC evolutionary biology 8, 1-10, 2008
1072008
Betweenness-based decomposition methods for social and biological networks
JW Pinney, DR Westhead
Interdisciplinary statistics and bioinformatics 25, 87-90, 2006
1002006
The Arabidopsis co‐expression tool (act): a WWW‐based tool and database for microarray‐based gene expression analysis
CH Jen, IW Manfield, I Michalopoulos, JW Pinney, WGT Willats, ...
The Plant Journal 46 (2), 336-348, 2006
902006
Annotating the Plasmodium genome and the enigma of the shikimate pathway
GA McConkey, JW Pinney, DR Westhead, K Plueckhahn, TB Fitzpatrick, ...
TRENDS in Parasitology 20 (2), 60-65, 2004
862004
Identifying the important HIV-1 recombination breakpoints
J Archer, JW Pinney, J Fan, E Simon-Loriere, EJ Arts, M Negroni, ...
PLoS computational biology 4 (9), e1000178, 2008
852008
The evolution of the phage shock protein response system: interplay between protein function, genomic organization, and system function
M Huvet, T Toni, X Sheng, T Thorne, G Jovanovic, C Engl, M Buck, ...
Molecular biology and evolution 28 (3), 1141-1155, 2011
742011
Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems
JI MacPherson, JE Dickerson, JW Pinney, DL Robertson
PLoS computational biology 6 (7), e1000863, 2010
712010
Reconstruction of ancestral protein interaction networks for the bZIP transcription factors
JW Pinney, GD Amoutzias, M Rattray, DL Robertson
Proceedings of the National Academy of Sciences 104 (51), 20449-20453, 2007
622007
Metabolic reconstruction and analysis for parasite genomes
JW Pinney, B Papp, C Hyland, L Wambua, DR Westhead, GA McConkey
TRENDS in Parasitology 23 (11), 548-554, 2007
512007
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