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William R. Holmes
William R. Holmes
Department of Physics and Astronomy
Verified email at vanderbilt.edu - Homepage
Title
Cited by
Cited by
Year
A comparison of computational models for eukaryotic cell shape and motility
WR Holmes, L Edelstein-Keshet
PLoS computational biology 8 (12), e1002793, 2012
1112012
The quality of response time data inference: A blinded, collaborative assessment of the validity of cognitive models
G Dutilh, J Annis, SD Brown, P Cassey, NJ Evans, RPPP Grasman, ...
Psychonomic bulletin & review 26 (4), 1051-1069, 2019
1022019
Regimes of wave type patterning driven by refractory actin feedback: transition from static polarization to dynamic wave behaviour
WR Holmes, AE Carlsson, L Edelstein-Keshet
Physical biology 9 (4), 046005, 2012
852012
Synthetic spatially graded Rac activation drives cell polarization and movement
B Lin, WR Holmes, CJ Wang, T Ueno, A Harwell, L Edelstein-Keshet, ...
Proceedings of the National Academy of Sciences 109 (52), E3668-E3677, 2012
772012
From simple to detailed models for cell polarization
L Edelstein-Keshet, WR Holmes, M Zajac, M Dutot
Philosophical Transactions of the Royal Society B: Biological Sciences 368 …, 2013
742013
A practical guide to the Probability Density Approximation (PDA) with improved implementation and error characterization
WR Holmes
Journal of Mathematical Psychology 68, 13-24, 2015
662015
A new framework for modeling decisions about changing information: The Piecewise Linear Ballistic Accumulator model
WR Holmes, JS Trueblood, A Heathcote
Cognitive psychology 85, 1-29, 2016
622016
Modelling cell polarization driven by synthetic spatially graded Rac activation
WR Holmes, B Lin, A Levchenko, L Edelstein-Keshet
PLoS computational biology 8 (6), e1002366, 2012
602012
Analysis of a minimal Rho-GTPase circuit regulating cell shape
WR Holmes, L Edelstein-Keshet
Physical Biology 13 (4), 046001, 2016
532016
A mathematical model coupling polarity signaling to cell adhesion explains diverse cell migration patterns
WR Holmes, JS Park, A Levchenko, L Edelstein-Keshet
PLoS computational biology 13 (5), e1005524, 2017
442017
Mechanochemical feedback underlies coexistence of qualitatively distinct cell polarity patterns within diverse cell populations
JS Park, WR Holmes, SH Lee, HN Kim, DH Kim, MK Kwak, CJ Wang, ...
Proceedings of the National Academy of Sciences 114 (28), E5750-E5759, 2017
422017
Computational modeling of single‐cell mechanics and cytoskeletal mechanobiology
V Rajagopal, WR Holmes, PVS Lee
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 10 (2), e1407, 2018
352018
Local perturbation analysis: a computational tool for biophysical reaction-diffusion models
WR Holmes, MA Mata, L Edelstein-Keshet
Biophysical journal 108 (2), 230-236, 2015
352015
The interplay between Wnt mediated expansion and negative regulation of growth promotes robust intestinal crypt structure and homeostasis
H Du, Q Nie, WR Holmes
PLoS computational biology 11 (8), e1004285, 2015
342015
An efficient, nonlinear stability analysis for detecting pattern formation in reaction diffusion systems
WR Holmes
Bulletin of mathematical biology 76 (1), 157-183, 2014
332014
Response-time data provide critical constraints on dynamic models of multi-alternative, multi-attribute choice
NJ Evans, WR Holmes, JS Trueblood
Psychonomic Bulletin & Review 26 (3), 901-933, 2019
322019
Computational modelling of epidermal stratification highlights the importance of asymmetric cell division for predictable and robust layer formation
A Gord, WR Holmes, X Dai, Q Nie
Journal of the Royal Society Interface 11 (99), 20140631, 2014
312014
A model for intracellular actin waves explored by nonlinear local perturbation analysis
MA Mata, M Dutot, L Edelstein-Keshet, WR Holmes
Journal of theoretical biology 334, 149-161, 2013
302013
Bayesian analysis of the piecewise diffusion decision model
WR Holmes, JS Trueblood
Behavior research methods 50 (2), 730-743, 2018
272018
Gene expression noise enhances robust organization of the early mammalian blastocyst
WR Holmes, NS Reyes de Mochel, Q Wang, H Du, T Peng, M Chiang, ...
PLoS computational biology 13 (1), e1005320, 2017
272017
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