Paul DW Kirk
Paul DW Kirk
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Cited by
Cited by
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 2674, 2019
A fast and efficient colocalization algorithm for identifying shared genetic risk factors across multiple traits
CN Foley, JR Staley, PG Breen, BB Sun, PDW Kirk, S Burgess, ...
Nature communications 12 (1), 764, 2021
Bayesian correlated clustering to integrate multiple datasets
P Kirk, JE Griffin, RS Savage, Z Ghahramani, DL Wild
Bioinformatics 28 (24), 3290-3297, 2012
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation
J Liepe, P Kirk, S Filippi, T Toni, CP Barnes, MPH Stumpf
Nature protocols 9 (2), 439-456, 2014
ABC-SysBio—approximate Bayesian computation in Python with GPU support
J Liepe, C Barnes, E Cule, K Erguler, P Kirk, T Toni, MPH Stumpf
Bioinformatics 26 (14), 1797-1799, 2010
Model selection in systems and synthetic biology
P Kirk, T Thorne, MPH Stumpf
Current opinion in biotechnology 24 (4), 767-774, 2013
A comprehensive evaluation of nasal and bronchial cytokines and chemokines following experimental rhinovirus infection in allergic asthma: increased interferons (IFN-γ and IFN…
TT Hansel, T Tunstall, MB Trujillo-Torralbo, B Shamji, A Del-Rosario, ...
EBioMedicine 19, 128-138, 2017
Topological sensitivity analysis for systems biology
AC Babtie, P Kirk, MPH Stumpf
Proceedings of the National Academy of Sciences 111 (52), 18507-18512, 2014
The RNA landscape of the human placenta in health and disease
S Gong, F Gaccioli, J Dopierala, U Sovio, E Cook, PJ Volders, L Martens, ...
Nature Communications 12 (1), 2639, 2021
Gaussian process regression bootstrapping: exploring the effects of uncertainty in time course data
PDW Kirk, MPH Stumpf
Bioinformatics 25 (10), 1300-1306, 2009
Systems biology (un) certainties
PDW Kirk, AC Babtie, MPH Stumpf
Science 350 (6259), 386-388, 2015
A general moment expansion method for stochastic kinetic models
A Ale, P Kirk, MPH Stumpf
The Journal of chemical physics 138 (17), 2013
Multivariate moment closure techniques for stochastic kinetic models
E Lakatos, A Ale, PDW Kirk, MPH Stumpf
The Journal of chemical physics 143 (9), 2015
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach
P Meyer, T Cokelaer, D Chandran, KH Kim, PR Loh, G Tucker, M Lipson, ...
BMC systems biology 8, 1-18, 2014
Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements
EJ Cooke, RS Savage, PDW Kirk, R Darkins, DL Wild
BMC bioinformatics 12, 1-12, 2011
Model selection in systems biology depends on experimental design
D Silk, PDW Kirk, CP Barnes, T Toni, MPH Stumpf
PLoS computational biology 10 (6), e1003650, 2014
Longitudinal proteomic profiling of dialysis patients with COVID-19 reveals markers of severity and predictors of death
J Gisby, CL Clarke, N Medjeral-Thomas, TH Malik, A Papadaki, ...
Elife 10, e64827, 2021
Robustness of MEK-ERK dynamics and origins of cell-to-cell variability in MAPK signaling
S Filippi, CP Barnes, PDW Kirk, T Kudo, K Kunida, SS McMahon, ...
Cell reports 15 (11), 2524-2535, 2016
MR-Clust: clustering of genetic variants in Mendelian randomization with similar causal estimates
CN Foley, AM Mason, PDW Kirk, S Burgess
Bioinformatics 37 (4), 531-541, 2021
A Bayesian mixture modelling approach for spatial proteomics
OM Crook, CM Mulvey, PDW Kirk, KS Lilley, L Gatto
PLoS computational biology 14 (11), e1006516, 2018
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