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Darren Martin
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RDP4: Detection and analysis of recombination patterns in virus genomes
DP Martin, B Murrell, M Golden, A Khoosal, B Muhire
Virus evolution 1 (1), vev003, 2015
29832015
Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592, 438 - 443, 2021
2720*2021
RDP3: a flexible and fast computer program for analyzing recombination
DP Martin, P Lemey, M Lott, V Moulton, D Posada, P Lefeuvre
Bioinformatics 26 (19), 2462-2463, 2010
18332010
RDP: detection of recombination amongst aligned sequences
D Martin, E Rybicki
Bioinformatics 16 (6), 562-563, 2000
15852000
SDT: a virus classification tool based on pairwise sequence alignment and identity calculation
BM Muhire, A Varsani, DP Martin
PloS one 9 (9), e108277, 2014
15182014
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ...
Nature 603 (7902), 679-686, 2022
14462022
RDP2: recombination detection and analysis from sequence alignments
DP Martin, C Williamson, D Posada
Bioinformatics 21 (2), 260-262, 2005
10832005
A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
DP Martin, D Posada, KA Crandall, C Williamson
Microbiology 11 (5), 2005
8902005
Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity
B Meng, A Abdullahi, IATM Ferreira, N Goonawardane, A Saito, I Kimura, ...
Nature 603 (7902), 706-714, 2022
8882022
ICTV Virus Taxonomy Profile: Geminiviridae
FM Zerbini, RW Briddon, A Idris, DP Martin, E Moriones, J Navas-Castillo, ...
Journal of general virology 98 (2), 131-133, 2017
8532017
Revision of Begomovirus taxonomy based on pairwise sequence comparisons
JK Brown, FM Zerbini, J Navas-Castillo, E Moriones, R Ramos-Sobrinho, ...
Archives of virology 160, 1593-1619, 2015
8082015
The phylogenetic handbook: a practical approach to phylogenetic analysis and hypothesis testing
AMV M Salemi, P Lemey
The phylogenetic handbook, 2009
784*2009
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa
H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ...
Nature medicine 28 (9), 1785-1790, 2022
624*2022
Gene-wide identification of episodic selection
B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ...
Molecular biology and evolution 32 (5), 1365-1371, 2015
5022015
Plant virus metagenomics: advances in virus discovery
MJ Roossinck, DP Martin, P Roumagnac
Phytopathology 105 (6), 716-727, 2015
4072015
Enabling the genomic revolution in Africa
THA Consortium
Science 344 (6190), 1346-1348, 2014
395*2014
Sixteen novel lineages of SARS-CoV-2 in South Africa
H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ...
Nature medicine 27, 440 - 446, 2021
3912021
The spread of tomato yellow leaf curl virus from the Middle East to the world
P Lefeuvre, DP Martin, G Harkins, P Lemey, AJA Gray, S Meredith, ...
PLoS pathogens 6 (10), e1001164, 2010
3532010
A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae)
B Muhire, DP Martin, JK Brown, J Navas-Castillo, E Moriones, FM Zerbini, ...
Archives of virology 158, 1411-1424, 2013
3372013
RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets
DP Martin, A Varsani, P Roumagnac, G Botha, S Maslamoney, T Schwab, ...
Virus Evolution 7 (1), veaa087, 2021
3272021
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Articles 1–20