| Spread of a SARS-CoV-2 variant through Europe in the summer of 2020 EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ... Nature 595 (7869), 707-712, 2021 | 625 | 2021 |
| CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants C Chen, S Nadeau, M Yared, P Voinov, N Xie, C Roemer, T Stadler Bioinformatics 38 (6), 1735-1737, 2022 | 254 | 2022 |
| Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC K Jahn, D Dreifuss, I Topolsky, A Kull, P Ganesanandamoorthy, ... Nature microbiology 7 (8), 1151-1160, 2022 | 140 | 2022 |
| The origin and early spread of SARS-CoV-2 in Europe SA Nadeau, TG Vaughan, J Scire, JS Huisman, T Stadler Proceedings of the National Academy of Sciences 118 (9), e2012008118, 2021 | 112 | 2021 |
| Detection of SARS-CoV-2 variants in Switzerland by genomic analysis of wastewater samples K Jahn, D Dreifuss, I Topolsky, A Kull, P Ganesanandamoorthy, ... MedRxiv 9, 1055, 2021 | 80 | 2021 |
| Reproductive number of the COVID-19 epidemic in Switzerland with a focus on the Cantons of Basel-Stadt and Basel-Landschaft J Scire, SA Nadeau, TG Vaughan, B Gavin, S Fuchs, J Sommer, KN Koch, ... Swiss medical weekly 150 (19-20), w20271, 2020 | 79 | 2020 |
| Metagenomic analysis reveals distinct patterns of denitrification gene abundance across soil moisture, nitrate gradients SA Nadeau, CA Roco, SJ Debenport, TR Anderson, KL Hofmeister, ... Environmental microbiology 21 (4), 1255-1266, 2019 | 68 | 2019 |
| Detection and genome sequencing of SARS-CoV-2 in a domestic cat with respiratory signs in Switzerland J Klaus, ML Meli, B Willi, S Nadeau, C Beisel, T Stadler, ... Viruses 13 (3), 496, 2021 | 67 | 2021 |
| Greenhouse gas emissions from septic systems in New York state AM Truhlar, BG Rahm, RA Brooks, SA Nadeau, ET Makarsky, MT Walter Journal of Environmental Quality 45 (4), 1153-1160, 2016 | 41 | 2016 |
| Quantification of the spread of SARS-CoV-2 variant B. 1.1. 7 in Switzerland C Chen, SA Nadeau, I Topolsky, M Manceau, JS Huisman, KP Jablonski, ... Epidemics 37, 100480, 2021 | 40 | 2021 |
| SARS-CoV-2 N501Y introductions and transmissions in Switzerland from beginning of October 2020 to February 2021—implementation of Swiss-wide diagnostic screening and whole … AR Goncalves Cabecinhas, T Roloff, M Stange, C Bertelli, M Huber, ... Microorganisms 9 (4), 677, 2021 | 40 | 2021 |
| Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data SA Nadeau, TG Vaughan, C Beckmann, I Topolsky, C Chen, E Hodcroft, ... Science Translational Medicine 15 (680), eabn7979, 2022 | 29 | 2022 |
| SeqCOVID-SPAIN consortium EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ... Spread of a SARS-CoV-2 variant through Europe in the, 2021 | 29 | 2021 |
| Within-patient genetic diversity of SARS-CoV-2 J Kuipers, AA Batavia, KP Jablonski, F Bayer, N Borgsmüller, A Dondi, ... BioRxiv, 2020.10. 12.335919, 2020 | 22 | 2020 |
| Estimates of outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data TG Vaughan, J Sciré, SA Nadeau, T Stadler medRxiv, 2020.09. 12.20193284, 2020 | 14 | 2020 |
| ETH SARS-CoV-2 Sequencing Team J Klaus, ML Meli, B Willi, S Nadeau, C Beisel, T Stadler, H Egberink, ... Detection and Genome Sequencing of SARS-CoV-2 in a Domestic Cat with …, 2021 | 13 | 2021 |
| Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data S Nadeau, C Beckmann, I Topolsky, T Vaughan, E Hodcroft, T Schär, ... medRxiv, 2020.10. 14.20212621, 2020 | 13 | 2020 |
| Influenza transmission dynamics quantified from wastewater S Nadeau, AJ Devaux, C Bagutti, M Alt, EI Hampe, M Kraus, E Würfel, ... medRxiv, 2023.01. 23.23284894, 2023 | 11 | 2023 |
| SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole … AR Goncalves Cabecinhas, T Roloff, M Stange, C Bertelli, M Huber, ... s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2021 | 6 | 2021 |
| Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss example C Chen, S Nadeau, I Topolsky, N Beerenwinkel, T Stadler Epidemics 39, 100576, 2022 | 5 | 2022 |
