| JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ... Nucleic acids research 46 (D1), D260-D266, 2017 | 1611 | 2017 |
| JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ... Nucleic acids research 42 (D1), D142-D147, 2013 | 1168 | 2013 |
| JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ... Nucleic acids research 44 (D1), D110-D115, 2015 | 1106 | 2015 |
| Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysis D Malhotra, E Portales-Casamar, A Singh, S Srivastava, D Arenillas, ... Nucleic acids research 38 (17), 5718-5734, 2010 | 837 | 2010 |
| JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles E Portales-Casamar, S Thongjuea, AT Kwon, D Arenillas, X Zhao, ... Nucleic acids research 38 (suppl_1), D105-D110, 2009 | 733 | 2009 |
| database of E Portales-casamar, S Thongjuea, AT Kwon, D Arenillas, X Zhao, E Valen, ... | 733* | 2009 |
| oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes SJ Ho Sui, JR Mortimer, DJ Arenillas, J Brumm, CJ Walsh, BP Kennedy, ... Nucleic acids research 33 (10), 3154-3164, 2005 | 464 | 2005 |
| oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets AT Kwon, DJ Arenillas, RW Hunt, WW Wasserman G3: Genes| Genomes| Genetics 2 (9), 987-1002, 2012 | 334 | 2012 |
| oPOSSUM: integrated tools for analysis of regulatory motif over-representation SJ Ho Sui, DL Fulton, DJ Arenillas, AT Kwon, WW Wasserman Nucleic acids research 35 (suppl_2), W245-W252, 2007 | 196 | 2007 |
| The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences E Portales-Casamar, D Arenillas, J Lim, MI Swanson, S Jiang, ... Nucleic acids research 37 (suppl_1), D54-D60, 2008 | 140 | 2008 |
| A SNP in the HTT promoter alters NF-κB binding and is a bidirectional genetic modifier of Huntington disease K Bečanović, A Nørremølle, SJ Neal, C Kay, JA Collins, D Arenillas, T Lilja, ... Nature neuroscience 18 (6), 807, 2015 | 134 | 2015 |
| In silico detection of sequence variations modifying transcriptional regulation MC Andersen, PG Engström, S Lithwick, D Arenillas, P Eriksson, ... PLoS computational biology 4 (1), e5, 2008 | 125 | 2008 |
| Systems biology evaluation of immune responses induced by human host defence peptide LL-37 in mononuclear cells N Mookherjee, P Hamill, J Gardy, D Blimkie, R Falsafi, A Chikatamarla, ... Molecular bioSystems 5 (5), 483-496, 2009 | 122 | 2009 |
| Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ... Nucleic acids research, gkw995, 2016 | 104 | 2016 |
| Mechanisms underlying p53 regulation of PIK3CA transcription in ovarian surface epithelium and in ovarian cancer A Astanehe, D Arenillas, WW Wasserman, PCK Leung, SE Dunn, ... J Cell Sci 121 (5), 664-674, 2008 | 101 | 2008 |
| A regulatory toolbox of MiniPromoters to drive selective expression in the brain E Portales-Casamar, DJ Swanson, L Liu, CN de Leeuw, KG Banks, ... Proceedings of the National Academy of Sciences 107 (38), 16589-16594, 2010 | 95 | 2010 |
| MIR@ NT@ N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model A Le Béchec, E Portales-Casamar, G Vetter, M Moes, PJ Zindy, A Saumet, ... BMC bioinformatics 12 (1), 67, 2011 | 75 | 2011 |
| Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas A Mathelier, C Lefebvre, AW Zhang, DJ Arenillas, J Ding, WW Wasserman, ... Genome biology 16 (1), 84, 2015 | 50 | 2015 |
| YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses C Chen, W Shi, BP Balaton, AM Matthews, Y Li, DJ Arenillas, A Mathelier, ... Scientific reports 6, 37324, 2016 | 41 | 2016 |
| PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina JW Hickmott, C Chen, DJ Arenillas, AJ Korecki, SL Lam, LL Molday, ... Molecular Therapy-Methods & Clinical Development 3, 2016 | 24 | 2016 |
