Xian Fan
Xian Fan
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A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68, 2015
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
Clonal architecture of secondary acute myeloid leukemia
MJ Walter, D Shen, L Ding, J Shao, DC Koboldt, K Chen, DE Larson, ...
New England Journal of Medicine 366 (12), 1090-1098, 2012
CREST maps somatic structural variation in cancer genomes with base-pair resolution
J Wang, CG Mullighan, J Easton, S Roberts, SL Heatley, J Ma, MC Rusch, ...
Nature methods 8 (8), 652-654, 2011
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
Background mutations in parental cells account for most of the genetic heterogeneity of induced pluripotent stem cells
MA Young, DE Larson, CW Sun, DR George, L Ding, CA Miller, L Lin, ...
Cell stem cell 10 (5), 570-582, 2012
BreakDancer: Identification of genomic structural variation from paired‐end read mapping
X Fan, TE Abbott, D Larson, K Chen
Current protocols in bioinformatics 45 (1), 15.6. 1-15.6. 11, 2014
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
TIGRA: a targeted iterative graph routing assembler for breakpoint assembly
K Chen, L Chen, X Fan, J Wallis, L Ding, G Weinstock
Genome research 24 (2), 310-317, 2014
novoBreak: local assembly for breakpoint detection in cancer genomes
Z Chong, J Ruan, M Gao, W Zhou, T Chen, X Fan, L Ding, AY Lee, ...
Nature methods 14 (1), 65-67, 2017
Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression
LD Wartman, DE Larson, Z Xiang, L Ding, K Chen, L Lin, P Cahan, ...
The Journal of clinical investigation 121 (4), 1445-1455, 2011
Genome modeling system: a knowledge management platform for genomics
M Griffith, OL Griffith, SM Smith, A Ramu, MB Callaway, AM Brummett, ...
PLoS computational biology 11 (7), e1004274, 2015
Methods for copy number aberration detection from single-cell DNA-sequencing data
XF Mallory, M Edrisi, N Navin, L Nakhleh
Genome biology 21 (1), 1-22, 2020
HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies
X Fan, M Chaisson, L Nakhleh, K Chen
Genome research 27 (5), 793-800, 2017
A multi-compartment segmentation framework with homeomorphic level sets
X Fan, PL Bazin, JL Prince
2008 IEEE Conference on Computer Vision and Pattern Recognition, 1-6, 2008
BreakTrans: uncovering the genomic architecture of gene fusions
K Chen, NE Navin, Y Wang, HK Schmidt, JW Wallis, B Niu, X Fan, H Zhao, ...
Genome biology 14 (8), 1-11, 2013
A multiple geometric deformable model framework for homeomorphic 3D medical image segmentation
X Fan, PL Bazin, J Bogovic, Y Bai, JL Prince
2008 IEEE Computer Society Conference on Computer Vision and Pattern …, 2008
Assessing the performance of methods for copy number aberration detection from single-cell DNA sequencing data
XF Mallory, M Edrisi, N Navin, L Nakhleh
PLoS computational biology 16 (7), e1008012, 2020
Towards accurate characterization of clonal heterogeneity based on structural variation
X Fan, W Zhou, Z Chong, L Nakhleh, K Chen
BMC bioinformatics 15 (1), 1-12, 2014
A generalized level set formulation of the Mumford-Shah functional for brain MR image segmentation
L Cheng, J Yang, X Fan, Y Zhu
Biennial International Conference on Information Processing in Medical …, 2005
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