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Tim Dallman
Tim Dallman
Verified email at uu.nl
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Performance comparison of benchtop high-throughput sequencing platforms
NJ Loman, RV Misra, TJ Dallman, C Constantinidou, SE Gharbia, J Wain, ...
Nature biotechnology 30 (5), 434-439, 2012
15982012
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
PM Ashton, S Nair, T Dallman, S Rubino, W Rabsch, S Mwaigwisya, ...
Nature biotechnology 33 (3), 296-300, 2015
4432015
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ...
Nature microbiology 2 (2), 1-10, 2016
4262016
Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to …
EJ Klemm, S Shakoor, AJ Page, FN Qamar, K Judge, DK Saeed, ...
MBio 9 (1), e00105-18, 2018
3872018
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution
LH Greene, TE Lewis, S Addou, A Cuff, T Dallman, M Dibley, O Redfern, ...
Nucleic acids research 35 (suppl_1), D291-D297, 2007
3422007
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis
F Pearl, A Todd, I Sillitoe, M Dibley, O Redfern, T Lewis, C Bennett, ...
Nucleic acids research 33 (suppl_1), D247-D251, 2005
3422005
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
Z Zhou, NF Alikhan, K Mohamed, Y Fan, M Achtman, D Brown, ...
Genome research 30 (1), 138-152, 2020
3072020
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ...
Genome biology 16 (1), 1-14, 2015
2852015
Detection of the plasmid-mediated mcr-1 gene conferring colistin resistance in human and food isolates of Salmonella enterica and Escherichia coli in England …
M Doumith, G Godbole, P Ashton, L Larkin, T Dallman, M Day, M Day, ...
Journal of Antimicrobial Chemotherapy 71 (8), 2300-2305, 2016
2572016
Rotavirus genotypes co-circulating in Europe between 2006 and 2009 as determined by EuroRotaNet, a pan-European collaborative strain surveillance network
MIGO MARA, T Dallman, KBA NYAI, BBO TTIGER, J Buesa, S Diedrich, ...
2532010
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study
KS Baker, TJ Dallman, PM Ashton, M Day, G Hughes, PD Crook, ...
The Lancet infectious diseases 15 (8), 913-921, 2015
1962015
Identification of Salmonella for public health surveillance using whole genome sequencing
PM Ashton, S Nair, TM Peters, JA Bale, DG Powell, A Painset, R Tewolde, ...
PeerJ 4, e1752, 2016
1852016
Whole-Genome Sequencing for National Surveillance of Shiga Toxin–Producing Escherichia coli O157
TJ Dallman, L Byrne, PM Ashton, LA Cowley, NT Perry, G Adak, ...
Clinical Infectious Diseases 61 (3), 305-312, 2015
1592015
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ...
Nature genetics 48 (10), 1211-1217, 2016
1462016
Rotavirus surveillance in Europe, 2005–2008: web-enabled reporting and real-time analysis of genotyping and epidemiological data
M Iturriza-Gómara, T Dallman, K Bányai, B Böttiger, J Buesa, S Diedrich, ...
Journal of Infectious Diseases 200 (Supplement 1), S215, 2009
1422009
Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak
ME Pearce, NF Alikhan, TJ Dallman, Z Zhou, K Grant, MCJ Maiden
International journal of food microbiology 274, 1-11, 2018
1202018
Structural diversity of domain superfamilies in the CATH database
GA Reeves, TJ Dallman, OC Redfern, A Akpor, CA Orengo
Journal of molecular biology 360 (3), 725-741, 2006
1182006
SnapperDB: a database solution for routine sequencing analysis of bacterial isolates
T Dallman, P Ashton, U Schafer, A Jironkin, A Painset, S Shaaban, ...
Bioinformatics 34 (17), 3028-3029, 2018
1152018
CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures
OC Redfern, A Harrison, T Dallman, FMG Pearl, CA Orengo
PLoS computational biology 3 (11), e232, 2007
1122007
Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis
T Inns, PM Ashton, S Herrera-Leon, J Lighthill, S Foulkes, T Jombart, ...
Epidemiology & Infection 145 (2), 289-298, 2017
1062017
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