Alan Walker

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Julian ParkhillUniversity of CambridgeVerified email at cam.ac.uk
Sylvia DuncanRowett Institute, U. of AberdeenVerified email at abdn.ac.uk
Harry J FlintRowett Institute of Nutrition and Health, University of Aberdeen, UKVerified email at abdn.ac.uk
Trevor D LawleyWellcome Trust Sanger InstituteVerified email at sanger.ac.uk
Nicholas J LomanProfessor of Microbial Genomics and Bioinformatics, University of BirminghamVerified email at bham.ac.uk
Kenneth D BruceKing's College LondonVerified email at kcl.ac.uk
Geraint B RogersDirector of Microbiome Research, SAHMRI Infection and Immunity Theme, Flinders University, AdelaideVerified email at sahmri.com
Mick WatsonProfessor of Bioinformatics and Computational Biology, The Roslin InstituteVerified email at roslin.ed.ac.uk
Susannah Jane SalterUniversity of CambridgeVerified email at cam.ac.uk
Michael J CoxLecturer, Institute of Microbiology and Infection, University of BirminghamVerified email at bham.ac.uk
William Cooksonimperial college londonVerified email at imperial.ac.uk
Marc D. AuffretScotland's Rural CollegeVerified email at sruc.ac.uk
Rainer RoeheProfessor of Animal Genetics and Microbiome, Scotland's Rural CollegeVerified email at sruc.ac.uk
Chris van der GastProfessor of Microbiology at Manchester Metropolitan UniversityVerified email at mmu.ac.uk
Christopher QuinceUniversity of WarwickVerified email at warwick.ac.uk
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
Bärbel StecherProfessor of Microbiology, Ludwig-Maximilians-University MunichVerified email at mvp.lmu.de
Karen P. ScottSenior Research Fellow, Rowett Institute of Nutrition and Health, University of AberdeenVerified email at abdn.ac.uk
Emilie StolarczykImperial College London, Division of Diabetes, Endocrinology and MetabolismVerified email at imperial.ac.uk
Leah CuthbertsonImperial College LondonVerified email at imperial.ac.uk

Alan Walker

Senior Lecturer, Rowett Institute, University of Aberdeen

Verified email at abdn.ac.uk - Homepage

Intestinal microbiota Gut microbiology Microbial ecology


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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses SJ Salter, MJ Cox, EM Turek, ST Calus, WO Cookson, MF Moffatt, ... BMC biology 12 (1), 1-12, 2014	2356	2014
Dominant and diet-responsive groups of bacteria within the human colonic microbiota AW Walker, J Ince, SH Duncan, LM Webster, G Holtrop, X Ze, D Brown, ... The ISME journal 5 (2), 220-230, 2011	1579	2011
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota B Stecher, R Robbiani, AW Walker, AM Westendorf, M Barthel, M Kremer, ... PLoS biology 5 (10), e244, 2007	1008	2007
Shotgun metagenomics, from sampling to analysis C Quince, AW Walker, JT Simpson, NJ Loman, N Segata Nature Biotechnology 35 (12), 833–844, 2017	914	2017
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in … AW Walker, JD Sanderson, C Churcher, GC Parkes, BN Hudspith, ... BMC microbiology 11 (1), 1-12, 2011	678	2011
pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon AW Walker, SH Duncan, EC McWilliam Leitch, MW Child, HJ Flint Applied and environmental microbiology 71 (7), 3692-3700, 2005	665	2005
Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions CJ Adler, K Dobney, LS Weyrich, J Kaidonis, AW Walker, W Haak, ... Nature genetics 45 (4), 450-455, 2013	590	2013
Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice TD Lawley, S Clare, AW Walker, MD Stares, TR Connor, C Raisen, ... PLoS pathogens 8 (10), e1002995, 2012	583	2012
Intestinal colonization resistance TD Lawley, AW Walker Immunology 138 (1), 1-11, 2013	512	2013
Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae B Stecher, R Denzler, L Maier, F Bernet, MJ Sanders, DJ Pickard, ... Proceedings of the National Academy of Sciences 109 (4), 1269-1274, 2012	385	2012
Antibiotic Treatment of Clostridium difficile Carrier Mice Triggers a Supershedder State, Spore-Mediated Transmission, and Severe Disease in … TD Lawley, S Clare, AW Walker, D Goulding, RA Stabler, N Croucher, ... Infection and immunity 77 (9), 3661-3669, 2009	366	2009
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen R Stewart, MD Auffret, A Warr, AH Wiser, MO Press, KW Langford, ... Nature communications 9, 870, 2018	334	2018
The Intestinal Microbiota Contributes to the Ability of Helminths to Modulate Allergic Inflammation MM Zaiss, A Rapin, L Lebon, LK Dubey, I Mosconi, K Sarter, A Piersigilli, ... Immunity 43, 998-1010, 2015	332	2015
The transcription factor T-bet regulates intestinal inflammation mediated by interleukin-7 receptor+ innate lymphoid cells N Powell, AW Walker, E Stolarczyk, JB Canavan, MR Gökmen, E Marks, ... Immunity 37 (4), 674-684, 2012	316	2012
Modulation of the human gut microbiota by dietary fibres occurs at the species level WSF Chung, AW Walker, P Louis, J Parkhill, J Vermeiren, D Bosscher, ... BMC biology 14 (1), 3 (doi: 10.1186/s12915-015-0224-3), 2016	295	2016
The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing NA Kennedy, AW Walker, SH Berry, SH Duncan, FM Farquarson, P Louis, ... PloS one 9 (2), e88982, 2014	266	2014
Selective colonization of insoluble substrates by human faecal bacteria ECMW Leitch, AW Walker, SH Duncan, G Holtrop, HJ Flint Environmental microbiology 9 (3), 667-679, 2007	263	2007
Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities CJ Van Der Gast, AW Walker, FA Stressmann, GB Rogers, P Scott, ... The ISME journal 5 (5), 780-791, 2011	240	2011
Phylogeny, culturing, and metagenomics of the human gut microbiota AW Walker, SH Duncan, P Louis, HJ Flint Trends in microbiology 22 (5), 267-274, 2014	231	2014
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery RD Stewart, MD Auffret, A Warr, AW Walker, R Roehe, M Watson Nature biotechnology 37 (8), 953-961, 2019	225	2019

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