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Amir Foroushani
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InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation
K Breuer, AK Foroushani, MR Laird, C Chen, A Sribnaia, R Lo, GL Winsor, ...
Nucleic acids research 41 (D1), D1228-D1233, 2013
12492013
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
AZSDCD Consortium
Nature Communications 10, 2019
3132019
Next generation sequencing reveals the expression of a unique miRNA profile in response to a Gram-positive bacterial infection
N Lawless, ABK Foroushani, MS McCabe, C O’Farrelly, DJ Lynn
PloS one 8 (3), e57543, 2013
1202013
Curating the innate immunity interactome
DJ Lynn, C Chan, M Naseer, M Yau, R Lo, A Sribnaia, G Ring, J Que, ...
BMC systems biology 4 (1), 1-14, 2010
1002010
Applications of Bayesian network models in predicting types of hematological malignancies
R Agrahari, A Foroushani, TR Docking, L Chang, G Duns, M Hudoba, ...
Scientific reports, 2018
872018
Enhancement of LIN28B-induced hematopoietic reprogramming by IGF2BP3
S Wang, B Chim, Y Su, P Khil, M Wong, A Foroushani, PT Smith, X Liu, ...
Genes & Development, 2019
622019
Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures
ABK Foroushani, FSL Brinkman, DJ Lynn
PeerJ 1, e229, 2013
612013
Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene …
A Foroushani, R Agrahari, R Docking, L Chang, G Duns, M Hudoba, ...
BMC medical genomics 10 (1), 1-15, 2017
572017
Regulatory T cell differentiation is controlled by αKG-induced alterations in mitochondrial metabolism and lipid homeostasis
Cell Reports, 2021
562021
Profiling microRNA expression in bovine alveolar macrophages using RNA-seq
P Vegh, ABK Foroushani, DA Magee, MS McCabe, JA Browne, ...
Veterinary immunology and immunopathology 155 (4), 238-244, 2013
462013
Verifying CIM models of apache web-server configurations
C Sinz, A Khosravizadeh, W Kuchlin, V Mihajlovski
Third International Conference on Quality Software, 2003. Proceedings., 290-297, 2003
222003
Post-transcriptional regulation of human endogenous retroviruses by RNA-Binding Motif Protein 4, RBM4
AK Foroushani, B Chim, M Wong, A Rastegar, PT Smith, S Wang, ...
Proceedings of the National Academy of Sciences 117 (42), 26520-26530, 2020
122020
Post-transcriptional regulation of human endogenous retroviruses by RNA-Binding Motif Protein 4, RBM4
AK Foroushani, B Chim, M Wong, A Rastegar, KD Barbian, C Martens, ...
BioRxiv, 2020
122020
PFC: An Efficient Soft Graph Clustering Method for PPI Networks Based on Purifying and Filtering the Coupling Matrix
Y Liu, A Foroushani
International Conference on Intelligent Computing, 247-257, 2016
8*2016
C3HeB/FeJ Mice mimic many aspects of gene expression and pathobiological features of human hepatocellular carcinoma
JA Zavadil, MCS Herzig, K Hildreth, A Foroushani, W Boswell, R Walter, ...
Molecular carcinogenesis 58 (3), 309-320, 2019
32019
An Efficient Soft Graph Clustering Method for PPI Networks based on Purifying and Filtering the Coupling Matrix
Y Liu, A Foroushani
Proceedings of the International Conference on Bioinformatics …, 2011
22011
MATRIN3 deficiency triggers autoinflammation via cGAS-STING activation
Z Islam, A Polash, M Suzawa, B Chim, S Kuhn, S Sultana, N Cutrona, ...
bioRxiv, 2024.04. 01.587645, 2024
12024
αKG inhibits Regulatory T cell differentiation by coupling lipidome remodelling to mitochondrial metabolism
MI Matias, CS Yong, A Foroushani, E Sezgin, KR Levental, A Talebi, ...
bioRxiv, 2020
12020
Enabling systems-level analyses of the host response to infectious diseases in bovine and other mammalian species
AB Khosravizadeh Foroushani
Simon Fraser University, 2014
2014
Approaches on overlapping graph clustering for systems biology
ABK Foroushani
THE UNIVERSITY OF TEXAS AT DALLAS, 2009
2009
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Articles 1–20