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Tulio de Oliveira
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Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
15012021
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ...
Nature 603 (7902), 679-686, 2022
14732022
Efficacy of the ChAdOx1 nCoV-19 Covid-19 vaccine against the B. 1.351 variant
SA Madhi, V Baillie, CL Cutland, M Voysey, AL Koen, L Fairlie, ...
New England Journal of Medicine 384 (20), 1885-1898, 2021
13892021
SARS-CoV-2 501Y. V2 escapes neutralization by South African COVID-19 donor plasma
CK Wibmer, F Ayres, T Hermanus, M Madzivhandila, P Kgagudi, ...
Nature medicine 27 (4), 622-625, 2021
12892021
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
medrxiv, 2020.12. 21.20248640, 2020
12062020
Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization
S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ...
Nature 602 (7898), 654-656, 2022
10402022
The biological and clinical significance of emerging SARS-CoV-2 variants
K Tao, PL Tzou, J Nouhin, RK Gupta, T de Oliveira, SL Kosakovsky Pond, ...
Nature Reviews Genetics 22 (12), 757-773, 2021
10012021
New SARS-CoV-2 variants—clinical, public health, and vaccine implications
SS Abdool Karim, T de Oliveira
New England Journal of Medicine 384 (19), 1866-1868, 2021
7862021
Efficacy of NVX-CoV2373 Covid-19 vaccine against the B. 1.351 variant
V Shinde, S Bhikha, Z Hoosain, M Archary, Q Bhorat, L Fairlie, U Lalloo, ...
New England Journal of Medicine 384 (20), 1899-1909, 2021
6872021
Escape of SARS-CoV-2 501Y. V2 from neutralization by convalescent plasma
S Cele, I Gazy, L Jackson, SH Hwa, H Tegally, G Lustig, J Giandhari, ...
Nature 593 (7857), 142-146, 2021
6742021
An automated genotyping system for analysis of HIV-1 and other microbial sequences
T De Oliveira, K Deforche, S Cassol, M Salminen, D Paraskevis, ...
Bioinformatics 21 (19), 3797-3800, 2005
5922005
Renewing Felsenstein’s phylogenetic bootstrap in the era of big data
F Lemoine, JB Domelevo Entfellner, E Wilkinson, D Correia, ...
Nature 556 (7702), 452-456, 2018
5572018
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa
H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ...
Nature medicine 28 (9), 1785-1790, 2022
5472022
T cell responses to SARS-CoV-2 spike cross-recognize Omicron
R Keeton, MB Tincho, A Ngomti, R Baguma, N Benede, A Suzuki, K Khan, ...
Nature 603 (7901), 488-492, 2022
5192022
HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression …
RK Gupta, J Gregson, N Parkin, H Haile-Selassie, A Tanuri, LA Forero, ...
The Lancet infectious diseases 18 (3), 346-355, 2018
4282018
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools
AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ...
Infection, genetics and evolution 19, 337-348, 2013
3952013
SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection
S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ...
MedRxiv, 2021
3652021
Sixteen novel lineages of SARS-CoV-2 in South Africa
H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ...
Nature medicine 27 (3), 440-446, 2021
3632021
Genome Detective: an automated system for virus identification from high-throughput sequencing data
M Vilsker, Y Moosa, S Nooij, V Fonseca, Y Ghysens, K Dumon, ...
Bioinformatics 35 (5), 871-873, 2019
3202019
Genomic and epidemiological monitoring of yellow fever virus transmission potential
NR Faria, MUG Kraemer, SC Hill, J Góes de Jesus, RS Aguiar, FCM Iani, ...
Science 361 (6405), 894-899, 2018
3052018
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