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Marc D. Auffret
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Temperature sensitivity of soil respiration rates enhanced by microbial community response
K Karhu, MD Auffret, JAJ Dungait, DW Hopkins, JI Prosser, BK Singh, ...
Nature 513 (7516), 81-84, 2014
5122014
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
RD Stewart, MD Auffret, A Warr, AH Wiser, MO Press, KW Langford, ...
Nature communications 9 (1), 1-11, 2018
3462018
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
RD Stewart, MD Auffret, A Warr, AW Walker, R Roehe, M Watson
Nature biotechnology 37 (8), 953-961, 2019
2282019
Degradation of a Mixture of Hydrocarbons, Gasoline, and Diesel Oil Additives by Rhodococcus aetherivorans and Rhodococcus wratislaviensis
M Auffret, D Labbé, G Thouand, CW Greer, F Fayolle-Guichard
Applied and environmental microbiology 75 (24), 7774-7782, 2009
1312009
The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle
MD Auffret, RJ Dewhurst, CA Duthie, JA Rooke, R John Wallace, ...
Microbiome 5 (1), 1-11, 2017
932017
Impact of water quality on the bacterial populations and off-flavours in recirculating aquaculture systems
M Auffret, É Yergeau, A Pilote, É Proulx, D Proulx, CW Greer, ...
FEMS microbiology ecology 84 (2), 235-247, 2013
742013
Importance of Rhodococcus strains in a bacterial consortium degrading a mixture of hydrocarbons, gasoline, and diesel oil additives revealed by metatranscriptomic analysis
MD Auffret, E Yergeau, D Labbé, F Fayolle-Guichard, CW Greer
Applied microbiology and biotechnology 99 (5), 2419-2430, 2015
692015
Establishment of a real-time PCR method for quantification of geosmin-producing Streptomyces spp. in recirculating aquaculture systems
M Auffret, A Pilote, E Proulx, D Proulx, G Vandenberg, R Villemur
Water research 45 (20), 6753-6762, 2011
572011
Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse Bos Taurus Breeds and Basal Diets
MD Auffret, R Stewart, RJ Dewhurst, CA Duthie, JA Rooke, RJ Wallace, ...
Frontiers in Microbiology 8, 2642, 2018
552018
The role of microbial community composition in controlling soil respiration responses to temperature
MD Auffret, K Karhu, A Khachane, JAJ Dungait, F Fraser, DW Hopkins, ...
PloS one 11 (10), e0165448, 2016
412016
Identification of rumen microbial genes involved in pathways linked to appetite, growth, and feed conversion efficiency in cattle
J Lima, MD Auffret, RD Stewart, RJ Dewhurst, CA Duthie, TJ Snelling, ...
Frontiers in genetics 10, 701, 2019
372019
Identification of complex rumen microbiome interaction within diverse functional niches as mechanisms affecting the variation of methane emissions in bovine
M Martínez-Álvaro, MD Auffret, RD Stewart, RJ Dewhurst, CA Duthie, ...
Frontiers in microbiology 11, 659, 2020
322020
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
RD Stewart, MD Auffret, TJ Snelling, R Roehe, M Watson
Bioinformatics 35 (12), 2150-2152, 2019
292019
Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy
RD Stewart, MD Auffret, R Roehe, M Watson
BioRxiv, 421024, 2018
232018
Reducing geosmin off-flavor compounds and waste outputs through dietary phosphorus management in rainbow trout aquaculture
P Sarker, A Pilote, M Auffret, É Proulx, R Villemur, MH Deschamps, ...
Aquaculture Environment Interactions 6 (1), 105-117, 2014
212014
Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements
TJ Snelling, MD Auffret, CA Duthie, RD Stewart, M Watson, RJ Dewhurst, ...
Animal Microbiome 1 (1), 1-14, 2019
192019
The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle. Microbiome 5: 159
MD Auffret, RJ Dewhurst, CA Duthie, JA Rooke, R John Wallace, ...
DOI 10.1186/s40168-017-0378-z, 2017
172017
Impact of seasonal temperature transition, alkalinity and other abiotic factors on the persistence of viruses in swine and dairy manures
MD Auffret, J Brassard, TH Jones, N Gagnon, MJ Gagné, V Muehlhauser, ...
Science of the total Environment 659, 640-648, 2019
122019
The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics
RD Stewart, MD Auffret, A Warr, AW Walker, R Roehe, M Watson
BioRxiv, 489443, 2018
112018
Identification of microbial genetic capacities and potential mechanisms within the rumen microbiome explaining differences in beef cattle feed efficiency
MD Auffret, RD Stewart, RJ Dewhurst, CA Duthie, M Watson, R Roehe
Frontiers in microbiology 11, 1229, 2020
92020
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