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Tamir Tuller (תמיר טולר)
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An evolutionarily conserved mechanism for controlling the efficiency of protein translation
T Tuller, A Carmi, K Vestsigian, S Navon, Y Dorfan, J Zaborske, T Pan, ...
Cell 141 (2), 344-354, 2010
8532010
Translation efficiency is determined by both codon bias and folding energy
T Tuller, YY Waldman, M Kupiec, E Ruppin
Proceedings of the national academy of sciences 107 (8), 3645-3650, 2010
5902010
The effect of tRNA levels on decoding times of mRNA codons
A Dana, T Tuller
Nucleic acids research 42 (14), 9171-9181, 2014
2192014
The average common substring approach to phylogenomic reconstruction
I Ulitsky, D Burstein, T Tuller, B Chor
Journal of Computational Biology 13 (2), 336-350, 2006
2152006
Composite effects of gene determinants on the translation speed and density of ribosomes
T Tuller, I Veksler-Lublinsky, N Gazit, M Kupiec, E Ruppin, M Ziv-Ukelson
Genome biology 12 (11), 1-18, 2011
2042011
Genome-scale analysis of translation elongation with a ribosome flow model
S Reuveni, I Meilijson, M Kupiec, E Ruppin, T Tuller
PLoS computational biology 7 (9), e1002127, 2011
1812011
Multiple roles of the coding sequence 5′ end in gene expression regulation
T Tuller, H Zur
Nucleic acids research 43 (1), 13-28, 2015
1792015
Determinants of protein abundance and translation efficiency in S. cerevisiae
T Tuller, M Kupiec, E Ruppin
PLoS computational biology 3 (12), e248, 2007
1472007
Maximum likelihood of phylogenetic networks
G Jin, L Nakhleh, S Snir, T Tuller
Bioinformatics 22 (21), 2604-2611, 2006
1372006
Maximum likelihood of evolutionary trees: hardness and approximation
B Chor, T Tuller
Bioinformatics 21 (suppl_1), i97-i106, 2005
1372005
Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells
A Dana, T Tuller
PLoS computational biology 8 (11), e1002755, 2012
1342012
Strong association between mRNA folding strength and protein abundance in S. cerevisiae
H Zur, T Tuller
EMBO reports 13 (3), 272-277, 2012
1072012
New universal rules of eukaryotic translation initiation fidelity
H Zur, T Tuller
PLoS computational biology 9 (7), e1003136, 2013
992013
Common and specific signatures of gene expression and protein–protein interactions in autoimmune diseases
T Tuller, S Atar, E Ruppin, M Gurevich, A Achiron
Genes & Immunity 14 (2), 67-82, 2013
992013
Association between translation efficiency and horizontal gene transfer within microbial communities
T Tuller, Y Girshovich, Y Sella, A Kreimer, S Freilich, M Kupiec, U Gophna, ...
Nucleic acids research 39 (11), 4743-4755, 2011
992011
Modelling the efficiency of codon–tRNA interactions based on codon usage bias
R Sabi, T Tuller
DNA research 21 (5), 511-526, 2014
952014
Inferring phylogenetic networks by the maximum parsimony criterion: a case study
G Jin, L Nakhleh, S Snir, T Tuller
Molecular Biology and Evolution 24 (1), 324-337, 2007
952007
A model for competition for ribosomes in the cell
A Raveh, M Margaliot, ED Sontag, T Tuller
Journal of The Royal Society Interface 13 (116), 20151062, 2016
912016
Maximum likelihood of evolutionary trees is hard
B Chor, T Tuller
Annual International Conference on Research in Computational Molecular …, 2005
882005
Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages
YY Waldman, T Tuller, T Shlomi, R Sharan, E Ruppin
Nucleic acids research 38 (9), 2964-2974, 2010
772010
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