David Chagné

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Susan E GardinerHonorary Research Fellow, NZ Institute for Plant & Food Research (PFR)Verified email at plantandfood.co.nz
Ross CrowhurstThe New Zealand Institute for Plant and Food Research LtdVerified email at plantandfood.co.nz
Andrew AllanSchool of Biological Sciences, University of Auckland, and Plant and Food ResearchVerified email at plantandfood.co.nz
riccardo velascoDirector of the Viticulture and Enology Center, CREA VEVerified email at crea.gov.it
Vincent BusVerified email at plantandfood.co.nz
Richard V EspleyScientiest Plant & Food ResearchVerified email at plantandfood.co.nz
Cecilia DengNew Cultivar Innovation, The New Zealand Institute for Plant and Food Research LtdVerified email at plantandfood.co.nz
Nahla BassilUSDA ARS NCGRVerified email at usda.gov
Christophe PlomionINRAE, Univ. Bordeaux, BIOGECOVerified email at inrae.fr
Stuart TustinNew Zealand Institute for Plant & Food Research LtdVerified email at plantandfood.co.nz
Alessandro Cestarofondazione Edmund MachVerified email at fmach.it
Claudia WiedowGeneticistVerified email at plantandfood.co.nz
Robert J. SchafferPlant and Food Research, University of Auckland, Michigan State University, John Innes CentreVerified email at plantandfood.co.nz
Baptiste GuittonUMR AGAP - CIRADVerified email at cirad.fr
Daryl RowanScience Group Leader, NZ Institute for Plant and Food Research LimitedVerified email at plantandfood.co.nz
Mareike KnäbelScientist The New Zealand Institute for Plant & Food Research LimitedVerified email at plantandfood.co.nz
Toshi FosterSenior Scientist, Plant and Food ResearchVerified email at plantandfood.co.nz
Evelyne CostesINRAEVerified email at inrae.fr
Jill BushakraPost-Doctoral Research Assoc.Verified email at ars.usda.gov
Charles-Eric DurelScientist, INRA, FranceVerified email at angers.inra.fr

David Chagné

The New Zealand Institute for Plant & Food Research Ltd (Plant & Food Research)

Verified email at plantandfood.co.nz - Homepage

Plant genetics breeding and genomics


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The genome of the domesticated apple (Malus × domestica Borkh.) R Velasco, A Zharkikh, J Affourtit, A Dhingra, A Cestaro, A Kalyanaraman, ... Nature genetics 42 (10), 833-839, 2010	2297	2010
Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples RV Espley, C Brendolise, D Chagne, S Kutty-Amma, S Green, R Volz, ... The Plant Cell 21 (1), 168-183, 2009	511	2009
High temperature reduces apple fruit colour via modulation of the anthocyanin regulatory complex KUI Lin‐Wang, D Micheletti, J Palmer, R Volz, L Lozano, R Espley, ... Plant, Cell & Environment 34 (7), 1176-1190, 2011	394	2011
Genome-wide SNP detection, validation, and development of an 8K SNP array for apple D Chagné, RN Crowhurst, M Troggio, MW Davey, B Gilmore, C Lawley, ... PloS one 7 (2), e31745, 2012	339	2012
An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes D Chagné, K Lin-Wang, RV Espley, RK Volz, NM How, S Rouse, ... Plant physiology 161 (1), 225-239, 2013	302	2013
The draft genome sequence of European pear (Pyrus communis L.‘Bartlett’) D Chagné, RN Crowhurst, M Pindo, A Thrimawithana, C Deng, H Ireland, ... PloS one 9 (4), e92644, 2014	285	2014
Genomic selection for fruit quality traits in apple (Malus× domestica Borkh.) S Kumar, D Chagné, MCAM Bink, RK Volz, C Whitworth, C Carlisle PloS one 7 (5), e36674, 2012	256	2012
Cross-species transferability and mapping of genomic and cDNA SSRs in pines D Chagné, P Chaumeil, A Ramboer, C Collada, A Guevara, MT Cervera, ... Theoretical and Applied Genetics 109, 1204-1214, 2004	253	2004
Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple D Chagné, CM Carlisle, C Blond, RK Volz, CJ Whitworth, NC Oraguzie, ... BMC genomics 8 (1), 1-11, 2007	251	2007
Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh) L Bianco, A Cestaro, DJ Sargent, E Banchi, S Derdak, M Di Guardo, ... PloS one 9 (10), e110377, 2014	240	2014
Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening RN Crowhurst, AP Gleave, EA MacRae, C Ampomah-Dwamena, ... BMC genomics 9 (1), 1-26, 2008	228	2008
Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences JM Celton, DS Tustin, D Chagné, SE Gardiner Tree Genetics & Genomes 5 (1), 93-107, 2009	200	2009
Development of a set of SNP markers present in expressed genes of the apple D Chagné, K Gasic, RN Crowhurst, Y Han, HC Bassett, DR Bowatte, ... Genomics 92 (5), 353-358, 2008	198	2008
Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers S Mariette, D Chagné, C Lézier, P Pastuszka, A Raffin, C Plomion, ... Heredity 86 (4), 469-479, 2001	190	2001
A genomics approach to understanding the role of auxin in apple (Malus x domestica) fruit size control F Devoghalaere, T Doucen, B Guitton, J Keeling, W Payne, TJ Ling, ... BMC Plant Biology 12 (1), 1-15, 2012	186	2012
Rights, interests and expectations: Indigenous perspectives on unrestricted access to genomic data M Hudson, NA Garrison, R Sterling, NR Caron, K Fox, J Yracheta, ... Nature Reviews Genetics 21 (6), 377-384, 2020	168	2020
Genetic control of biennial bearing in apple B Guitton, JJ Kelner, R Velasco, SE Gardiner, D Chagne, E Costes Journal of experimental botany 63 (1), 131-149, 2012	165	2012
Novel genomic approaches unravel genetic architecture of complex traits in apple S Kumar, DJ Garrick, MCAM Bink, C Whitworth, D Chagné, RK Volz BMC genomics 14, 1-13, 2013	147	2013
A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants SM Pilkington, R Crowhurst, E Hilario, S Nardozza, L Fraser, Y Peng, ... BMC genomics 19 (1), 1-19, 2018	144	2018
Diversification and independent domestication of Asian and European pears J Wu, Y Wang, J Xu, SS Korban, Z Fei, S Tao, R Ming, S Tai, AM Khan, ... Genome Biology 19 (1), 1-16, 2018	142	2018

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