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Rob Beiko
Rob Beiko
Associate Professor of Computer Science, Dalhousie University
Verified email at dal.ca - Homepage
Title
Cited by
Cited by
Year
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...
Nature biotechnology 31 (9), 814-821, 2013
86232013
STAMP: statistical analysis of taxonomic and functional profiles
DH Parks, GW Tyson, P Hugenholtz, RG Beiko
Bioinformatics 30 (21), 3123-3124, 2014
35432014
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ...
Nucleic acids research 48 (D1), D517-D525, 2020
26602020
Identifying biologically relevant differences between metagenomic communities
DH Parks, RG Beiko
Bioinformatics 26 (6), 715-721, 2010
9622010
A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria
CJ Meehan, RG Beiko
Genome biology and evolution 6 (3), 703-713, 2014
7312014
Highways of gene sharing in prokaryotes
RG Beiko, TJ Harlow, MA Ragan
Proceedings of the National Academy of Sciences 102 (40), 14332-14337, 2005
5822005
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
BA Curtis, G Tanifuji, F Burki, A Gruber, M Irimia, S Maruyama, MC Arias, ...
Nature 492 (7427), 59-65, 2012
4242012
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ...
Nucleic acids research 51 (D1), D690-D699, 2023
4212023
Microbial shifts in the aging mouse gut
MGI Langille, CJ Meehan, JE Koenig, AS Dhanani, RA Rose, SE Howlett, ...
Microbiome 2, 1-12, 2014
4132014
16S rRNA gene analysis with QIIME2
M Hall, RG Beiko
Microbiome analysis: methods and protocols, 113-129, 2018
4052018
Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation
M Lommer, M Specht, AS Roy, L Kraemer, R Andreson, MA Gutowska, ...
Genome biology 13, 1-21, 2012
2792012
Prokaryotic evolution and the tree of life are two different things
E Bapteste, MA O'Malley, RG Beiko, M Ereshefsky, JP Gogarten, ...
Biology direct 4, 1-20, 2009
2762009
Interactions in the microbiome: communities of organisms and communities of genes
E Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko
FEMS microbiology reviews 38 (1), 90-118, 2014
2362014
Predicting the functional potential of the microbiome from marker genes using PICRUSt
GM Douglas, RG Beiko, MGI Langille
Microbiome analysis: Methods and protocols, 169-177, 2018
2072018
Inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity
MW Hall, N Singh, KF Ng, DK Lam, MB Goldberg, HC Tenenbaum, ...
NPJ biofilms and microbiomes 3 (1), 2, 2017
1942017
Phylogenetic identification of lateral genetic transfer events
RG Beiko, N Hamilton
BMC evolutionary biology 6, 1-17, 2006
1932006
Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores
GDP Clarke, RG Beiko, MA Ragan, RL Charlebois
Journal of bacteriology 184 (8), 2072-2080, 2002
1692002
GenGIS: A geospatial information system for genomic data
DH Parks, M Porter, S Churcher, S Wang, C Blouin, J Whalley, S Brooks, ...
Genome research 19 (10), 1896-1904, 2009
1542009
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ...
Microbial genomics 3 (6), e000116, 2017
1522017
Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community
LA Hug, RG Beiko, AR Rowe, RE Richardson, EA Edwards
BMC genomics 13, 1-19, 2012
1422012
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Articles 1–20