Guillaume Bernard
Guillaume Bernard
Postdoctoral Fellow, Institut de Biologie de L’Ecole Normale Supérieure (IBENS)
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Cited by
Cited by
Benchmarking of alignment-free sequence comparison methods
A Zielezinski, HZ Girgis, G Bernard, CA Leimeister, K Tang, T Dencker, ...
Genome biology 20, 1-18, 2019
Microbial dark matter investigations: how microbial studies transform biological knowledge and empirically sketch a logic of scientific discovery
G Bernard, JS Pathmanathan, R Lannes, P Lopez, E Bapteste
Genome biology and evolution 10 (3), 707-715, 2018
Inferring phylogenies of evolving sequences without multiple sequence alignment
CX Chan, G Bernard, O Poirion, JM Hogan, MA Ragan
Scientific reports 4, 6504, 2014
Alignment-free inference of hierarchical and reticulate phylogenomic relationships
G Bernard, CX Chan, Y Chan, XY Chua, Y Cong, JM Hogan, ...
Briefings in Bioinformatics 20 (2), 426-435, 2019
Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer
G Bernard, CX Chan, MA Ragan
Scientific reports 6 (1), 28970, 2016
k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank
G Bernard, P Greenfield, MA Ragan, CX Chan
Msystems 3 (6), 10.1128/msystems. 00257-18, 2018
Recapitulating phylogenies using k-mers: from trees to networks
G Bernard, MA Ragan, CX Chan
F1000Research 5 (2789), 2016
Molecular phylogenetics before sequences: Oligonucleotide catalogs as k-mer spectra
MA Ragan, G Bernard, CX Chan
RNA biology 11 (3), 176-185, 2014
Inferring phylogenomic relationship of microbes using scalable alignment-free methods
G Bernard, TG Stephens, RA González-Pech, CX Chan
Bacterial pangenomics: Methods and protocols, 69-76, 2021
Aging at evolutionary crossroads: longitudinal gene co-expression network analyses of proximal and ultimate causes of aging in bats
G Bernard, J Teuliere, P Lopez, E Corel, FJ Lapointe, E Bapteste
Molecular biology and evolution 39 (1), msab302, 2022
The distribution of genes associated with regulated cell death is decoupled from the mitochondrial phenotypes within unicellular eukaryotic hosts
J Teulière, G Bernard, E Bapteste
Frontiers in Cell and Developmental Biology 8, 536389, 2020
Patterns and drivers of diatom diversity and abundance in the global ocean
JJ Pierella Karlusich, K Cosnier, L Zinger, N Henry, C Nef, G Bernard, ...
bioRxiv, 2024.06. 08.598090, 2024
143 Prokaryote genomes
G Bernard, CX Chan, MA Ragan
The University of Queensland, 2016
Alignment-free network of 143 prokaryote genomes
G Bernard, CX Chan, MA Ragan
The University of Queensland, 2016
Network studies unveil new groups of highly divergent proteins in families as old as cellular life with important biological functions in the ocean
D Sussfeld, R Lannes, E Corel, G Bernard, P Martin, E Bapteste, ...
bioRxiv, 2024.01. 08.574615, 2024
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