| A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gonen, MP Menden, NJ Wang, ... Nat Biotech 32 (12), 1202-1212, 2014 | 754 | 2014 |
| A community computational challenge to predict the activity of pairs of compounds M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ... Nat Biotech 32 (12), 1213-1222, 2014 | 318 | 2014 |
| A Classification Framework Applied to Cancer Gene Expression Profiles H Hijazi, C Chan Journal of Healthcare Engineering 4 (2), 255-284, 2013 | 59 | 2013 |
| A scalability study of phylogenetic network inference methods using empirical datasets and simulations involving a single reticulation HA Hejase, KJ Liu BMC bioinformatics 17, 1-12, 2016 | 49 | 2016 |
| Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps HA Hejase, A Salman-Minkov, L Campagna, MJ Hubisz, IJ Lovette, ... Proceedings of the National Academy of Sciences 117 (48), 30554-30565, 2020 | 45 | 2020 |
| From summary statistics to gene trees: methods for inferring positive selection HA Hejase, N Dukler, A Siepel Trends in Genetics 36 (4), 243-258, 2020 | 33 | 2020 |
| A deep-learning approach for inference of selective sweeps from the ancestral recombination graph HA Hejase, Z Mo, L Campagna, A Siepel Molecular Biology and Evolution 39 (1), msab332, 2022 | 30 | 2022 |
| Improving Drug Sensitivity Prediction Using Different Types of Data HA Hejase, C Chan CPT: Pharmacometrics & Systems Pharmacology 4 (2), 2015 | 27 | 2015 |
| A multi-layer inference approach to reconstruct condition-specific genes and their regulation. M Wu, L Liu, H Hijazi, C Chan Bioinformatics 29 (12), 1541-1552, 2013 | 25 | 2013 |
| Fastnet: fast and accurate statistical inference of phylogenetic networks using large-scale genomic sequence data HA Hejase, N VandePol, GM Bonito, KJ Liu RECOMB International conference on Comparative Genomics, 242-259, 2018 | 15 | 2018 |
| Ensemble Classification of Cancer Types and Biomarker Identification H Hijazi, M Wu, A Nath, C Chan Drug Development Research 73 (7), 414–419, 2012 | 13 | 2012 |
| Gender Wage Gap in Lebanon: Explorative Analysis AJ Hejase, HJ Hejase, HA Hejase Journal of Applied Economics and Business Research 5 (1), 1-19, 2015 | 12 | 2015 |
| Mapping the genomic architecture of adaptive traits with interspecific introgressive origin: a coalescent-based approach HA Hejase, KJ Liu BMC Genomics 17 (Suppl 1), 8, 2016 | 7 | 2016 |
| Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences W Wang, J Smith, HA Hejase, KJ Liu Algorithms for Molecular Biology 15, 1-15, 2020 | 6 | 2020 |
| Sia: Selection inference using the ancestral recombination graph HA Hejase, Z Mo, L Campagna, A Siepel BioRxiv, 2021.06. 22.449427, 2021 | 5 | 2021 |
| Coal-Miner: a statistical method for GWA studies of quantitative traits with complex evolutionary origins HA Hejase, NV Pol, GM Bonito, PP Edger, KJ Liu Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 3 | 2017 |
| Fastnet: fast and accurate inference of phylogenetic networks using large-scale genomic sequence data HA Hejase, N VandePol, GA Bonito, KJ Liu bioRxiv, 132795, 2017 | 1 | 2017 |
| Systematic perturbation screens decode regulators of inflammatory macrophage states and identify a role for TNF mRNA m6A modification SM Haag, S Xie, C Eidenschenk, JP Fortin, M Callow, M Costa, A Lun, ... bioRxiv, 2024.04. 12.589122, 2024 | | 2024 |
| Fast and accurate statistical inference of phylogenetic networks using large-scale genomic sequence data HA Hejase, N VandePol, GM Bonito, KJ Liu | | 2017 |
| Scalable Phylogenetic Analysis and Functional Interpretation of Genomes with Complex Evolutionary Histories HEA Hejase Michigan State University, 2017 | | 2017 |
