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Yanming Di
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The NBP negative binomial model for assessing differential gene expression from RNA-Seq
Y Di, DW Schafer, JS Cumbie, JH Chang
Statistical applications in genetics and molecular biology 10 (1), 2011
2572011
The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster
KE Bushley, R Raja, P Jaiswal, JS Cumbie, M Nonogaki, AE Boyd, ...
PLoS genetics 9 (6), e1003496, 2013
2042013
Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa
K Vining, KR Pomraning, LJ Wilhelm, C Ma, M Pellegrini, Y Di, ...
BMC plant biology 13, 1-15, 2013
1272013
GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences
JS Cumbie, JA Kimbrel, Y Di, DW Schafer, LJ Wilhelm, SE Fox, ...
PloS one 6 (10), e25279, 2011
932011
A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries
S Gouthu, ST O’Neil, Y Di, M Ansarolia, M Megraw, LG Deluc
Journal of Experimental Botany 65 (20), 5889-5902, 2014
632014
Length bias correction in gene ontology enrichment analysis using logistic regression
G Mi, Y Di, S Emerson, JS Cumbie, JH Chang
Public Library of Science 7 (10), e46128, 2012
392012
Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides
CA Quandt, Y Di, J Elser, P Jaiswal, JW Spatafora
G3: Genes, Genomes, Genetics 6 (3), 731-741, 2016
292016
Goodness-of-fit tests and model diagnostics for negative binomial regression of RNA sequencing data
G Mi, Y Di, DW Schafer
PLoS One 10 (3), e0119254, 2015
222015
RNA-Seq for plant pathogenic bacteria
JA Kimbrel, Y Di, JS Cumbie, JH Chang
Genes 2 (4), 689-705, 2011
182011
Identifying stably expressed genes from multiple RNA-Seq data sets
B Zhuo, S Emerson, JH Chang, Y Di
PeerJ 4, e2791, 2016
172016
Model-based clustering with measurement or estimation errors
W Zhang, Y Di
Genes 11 (2), 185, 2020
162020
Comparison of multipoint linkage analyses for quantitative traits in the CEPH data: parametric LOD scores, variance components LOD scores, and Bayes factors
YJ Sung, Y Di, AQ Fu, JH Rothstein, W Sieh, L Tong, EA Thompson, ...
BMC proceedings 1, 1-6, 2007
162007
Higher order asymptotics for negative binomial regression inferences from RNA-sequencing data
Y Di, SC Emerson, DW Schafer, JA Kimbrel, JH Chang
Statistical applications in genetics and molecular biology 12 (1), 49-70, 2013
122013
Detecting hidden information in images: A comparative study
Y Di, H Liu, A Ramineni, A Sen
2nd Workshop on Privacy Preserving Data Mining (PPDM), 2003
122003
Revealing the sensory impact of different levels and combinations of esters and volatile thiols in Chardonnay wines
A Iobbi, Y Di, E Tomasino
Heliyon 9 (1), 2023
112023
Single-gene negative binomial regression models for RNA-Seq data with higher-order asymptotic inference
Y Di
Statistics and its interface 8 (4), 405, 2015
112015
Effect of linkage disequilibrium on the identification of functional variants
A Thomas, HJ Abel, Y Di, LL Faye, J Jin, J Liu, Z Wu, AD Paterson
Genetic Epidemiology 35 (S1), S115-S119, 2011
92011
Exact Trait‐Model‐Free Tests for Linkage Detection in Pedigrees
S Basu, Y Di, EA Thompson
Annals of human genetics 72 (5), 676-682, 2008
82008
Characterizing the extracellular matrix transcriptome of cervical, endometrial, and uterine cancers
CJ Cook, AE Miller, TH Barker, Y Di, KC Fogg
Matrix Biology Plus 15, 100117, 2022
72022
Test-statistic correlation and data-row correlation
B Zhuo, D Jiang, Y Di
Statistics & probability letters 167, 108903, 2020
62020
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Articles 1–20