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Jordan Douglas
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Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand
JL Geoghegan, X Ren, M Storey, J Hadfield, L Jelley, S Jefferies, ...
Nature communications 11 (1), 6351, 2020
1412020
Adaptive dating and fast proposals: Revisiting the phylogenetic relaxed clock model
J Douglas, R Zhang, R Bouckaert
PLoS computational biology 17 (2), e1008322, 2021
742021
Use of genomics to track coronavirus disease outbreaks, New Zealand
JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ...
Emerging Infectious Diseases 27 (5), 1317, 2021
432021
Real-time genomics for tracking severe acute respiratory syndrome coronavirus 2 border incursions after virus elimination, New Zealand
J Douglas, JL Geoghegan, J Hadfield, R Bouckaert, M Storey, X Ren, ...
Emerging infectious diseases 27 (9), 2361, 2021
412021
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations
J Douglas, FK Mendes, R Bouckaert, D Xie, CL Jiménez-Silva, ...
Virus evolution 7 (2), veab052, 2021
372021
StarBeast3: adaptive parallelized Bayesian inference under the multispecies coalescent
J Douglas, CL Jiménez-Silva, R Bouckaert
Systematic Biology 71 (4), 901-916, 2022
362022
Characterisation of assembly and ubiquitylation by the RBCC motif of Trim5α
JR Keown, JX Yang, J Douglas, DC Goldstone
Scientific reports 6 (1), 26837, 2016
362016
Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene
J Douglas, AJ Drummond, RL Kingston
Virus Evolution 7 (1), veab028, 2021
232021
Automated transformation of PDDL representations
P Riddle, M Barley, S Franco, J Douglas
Proceedings of the International Symposium on Combinatorial Search 6 (1 …, 2015
222015
Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand
L Jelley, J Douglas, X Ren, D Winter, A McNeill, S Huang, N French, ...
Nature Communications 13 (1), 4035, 2022
212022
Improving performance by reformulating PDDL into a bagged representation
P Riddle, J Douglas, M Barley, S Franco
Proceedings of the 8th Workshop on Heuristic Search for Domain-independent …, 2016
192016
Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border
J Douglas, D Winter, A McNeill, S Carr, M Bunce, N French, J Hadfield, ...
Nature Communications 13 (1), 6484, 2022
172022
UglyTrees: a browser-based multispecies coalescent tree visualizer
J Douglas
Bioinformatics 37 (2), 268-269, 2021
172021
Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia
C Jimenez-Silva, R Rivero, J Douglas, R Bouckaert, CJ Villabona-Arenas, ...
Communications Medicine 3 (1), 97, 2023
13*2023
Quantitatively defining species boundaries with more efficiency and more biological realism
J Douglas, R Bouckaert
Communications Biology 5 (1), 755, 2022
102022
Bayesian inference and comparison of stochastic transcription elongation models
J Douglas, R Kingston, AJ Drummond
PLoS computational biology 16 (2), e1006717, 2020
82020
Enzymic recognition of amino acids drove the evolution of primordial genetic codes
J Douglas, R Bouckaert, CW Carter Jr, PR Wills
Nucleic Acids Research 52 (2), 558-571, 2024
72024
Domain acquisition by Class I Aminoacyl-tRNA synthetase urzymes coordinated the catalytic functions of HVGH and KMSKS motifs
GQ Tang, JJH Elder, J Douglas, CW Carter Jr
Nucleic Acids Research 51 (15), 8070-8084, 2023
62023
Re-emergence of community transmission in Aotearoa New Zealand-Genomic overview of the Auckland Outbreak.(Accessed 28 October 2020). ESR
J Hadfield, J Douglas, J Geoghegan, M Storey, X Ren, N Freed, ...
62020
Analysis of bagged representations in PDDL
P Riddle, M Barley, S Franco, J Douglas
Heuristics and search for domain-independent planning, 2015
52015
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Articles 1–20