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Ira Cooke
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Cited by
Year
Tunable generic model for fluid bilayer membranes
IR Cooke, K Kremer, M Deserno
Physical Review E 72 (1), 011506, 2005
4612005
Solvent-free model for self-assembling fluid bilayer membranes: Stabilization of the fluid phase based on broad attractive tail potentials
IR Cooke, M Deserno
The Journal of chemical physics 123 (22), 2005
3212005
Coupling between lipid shape and membrane curvature
IR Cooke, M Deserno
Biophysical journal 91 (2), 487-495, 2006
2342006
Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis
H Liu, TG Stephens, RA González-Pech, VH Beltran, B Lapeyre, ...
Communications biology 1 (1), 95, 2018
1912018
Multi-omic data analysis using Galaxy
J Boekel, JM Chilton, IR Cooke, PL Horvatovich, PD Jagtap, L Käll, ...
Nature biotechnology 33 (2), 137-139, 2015
1592015
Integrating socio‐economics and ecology: a taxonomy of quantitative methods and a review of their use in agro‐ecology
IR Cooke, SA Queenborough, EHA Mattison, AP Bailey, DL Sandars, ...
Journal of Applied Ecology 46 (2), 269-277, 2009
812009
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages
H Ying, I Cooke, S Sprungala, W Wang, DC Hayward, Y Tang, G Huttley, ...
Genome biology 19, 1-24, 2018
712018
The Whole-Genome Sequence of the Coral Acropora millepora
H Ying, DC Hayward, I Cooke, W Wang, A Moya, KR Siemering, ...
Genome biology and evolution 11 (5), 1374-1379, 2019
702019
Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts
I Cooke, H Ying, S Forêt, P Bongaerts, JM Strugnell, O Simakov, J Zhang, ...
Science advances 6 (48), eabc6318, 2020
66*2020
The Southern Ocean: source and sink?
JM Strugnell, Y Cherel, IR Cooke, IG Gleadall, FG Hochberg, CM Ibáñez, ...
Deep Sea Research Part II: Topical Studies in Oceanography 58 (1-2), 196-204, 2011
622011
What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda?
AL Allcock, IR Cooke, JM Strugnell
Zoological Journal of the Linnean Society 161 (3), 573-586, 2011
572011
De Novo Characterisation of the Greenlip Abalone Transcriptome (Haliotis laevigata) with a Focus on the Heat Shock Protein 70 (HSP70) Family
BP Shiel, NE Hall, IR Cooke, NA Robinson, JM Strugnell
Marine biotechnology 17, 23-32, 2015
562015
Morphological stasis masks ecologically divergent coral species on tropical reefs
P Bongaerts, IR Cooke, H Ying, D Wels, S den Haan, ...
Current Biology 31 (11), 2286-2298. e8, 2021
55*2021
Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature
WG Nuez-Ortín, CG Carter, PD Nichols, IR Cooke, R Wilson
BMC genomics 19, 1-13, 2018
552018
Landscape, cropping and field boundary influences on bird abundance
GM Siriwardena, IR Cooke, WJ Sutherland
Ecography 35 (2), 162-173, 2012
552012
Stretching polymers in poor and bad solvents: Pullout peaks and an unraveling transition
IR Cooke, DRM Williams
Europhysics Letters 64 (2), 267, 2003
452003
Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data
K Sidorczuk, P Gagat, F Pietluch, J Kała, D Rafacz, L Bąkała, J Słowik, ...
Briefings in Bioinformatics 23 (5), bbac343, 2022
352022
ampir: an R package for fast genome-wide prediction of antimicrobial peptides
LCHW Fingerhut, DJ Miller, JM Strugnell, NL Daly, IR Cooke
Bioinformatics 36 (21), 5262-5263, 2020
332020
A pathway proteomic profile of ischemic stroke survivors reveals innate immune dysfunction in association with mild symptoms of depression–a pilot study
VA Nguyen, LM Carey, L Giummarra, P Faou, I Cooke, DW Howells, T Tse, ...
Frontiers in neurology 7, 193402, 2016
332016
An accessible proteogenomics informatics resource for cancer researchers
MC Chambers, PD Jagtap, JE Johnson, T McGowan, P Kumar, ...
Cancer research 77 (21), e43-e46, 2017
302017
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