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Francesc Coll
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A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
F Coll, R McNerney, JA Guerra-Assunção, JR Glynn, J Perdigão, ...
Nature communications 5 (1), 1-5, 2014
4602014
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
F Coll, R McNerney, MD Preston, JA Guerra-Assunção, A Warry, ...
Genome medicine 7 (1), 1-10, 2015
3292015
Genome-wide analysis of multi-and extensively drug-resistant Mycobacterium tuberculosis
F Coll, J Phelan, GA Hill-Cawthorne, MB Nair, K Mallard, S Ali, ...
Nature genetics 50 (2), 307-316, 2018
2452018
Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area
JA Guerra-Assunção, AC Crampin, R Houben, T Mzembe, K Mallard, ...
Elife 4, e05166, 2015
2082015
Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a …
JA Guerra-Assunção, RMGJ Houben, AC Crampin, T Mzembe, K Mallard, ...
The Journal of infectious diseases 211 (7), 1154-1163, 2015
1672015
SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences
F Coll, K Mallard, MD Preston, S Bentley, J Parkhill, R McNerney, N Martin, ...
Bioinformatics 28 (22), 2991-2993, 2012
1032012
Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance
J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ...
BMC medicine 14 (1), 1-13, 2016
982016
PolyTB: a genomic variation map for Mycobacterium tuberculosis
F Coll, M Preston, JA Guerra-Assunção, G Hill-Cawthorn, D Harris, ...
Tuberculosis 94 (3), 346-354, 2014
982014
Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community
F Coll, EM Harrison, MS Toleman, S Reuter, KE Raven, B Blane, ...
Science translational medicine 9 (413), eaak9745, 2017
862017
One health genomic surveillance of Escherichia coli demonstrates distinct lineages and mobile genetic elements in isolates from humans versus livestock
C Ludden, KE Raven, D Jamrozy, T Gouliouris, B Blane, F Coll, ...
MBio 10 (1), e02693-18, 2019
852019
Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing
TG Clark, K Mallard, F Coll, M Preston, S Assefa, D Harris, S Ogwang, ...
PloS one 8 (12), e83012, 2013
812013
Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations
AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ...
Scientific reports 5 (1), 1-15, 2015
772015
Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing
KE Raven, T Gouliouris, H Brodrick, F Coll, NM Brown, R Reynolds, ...
Clinical infectious diseases 64 (7), 886-893, 2017
712017
Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting
J Perdigão, H Silva, D Machado, R Macedo, F Maltez, C Silva, L Jordao, ...
BMC genomics 15 (1), 1-20, 2014
712014
Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan
A Ali, Z Hasan, R McNerney, K Mallard, G Hill-Cawthorne, F Coll, M Nair, ...
PloS one 10 (2), e0117771, 2015
702015
Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages
JE Phelan, F Coll, I Bergval, RM Anthony, R Warren, SL Sampson, ...
BMC genomics 17 (1), 1-12, 2016
652016
Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant
P Elliott, D Haw, H Wang, O Eales, CE Walters, KEC Ainslie, C Atchison, ...
Science 374 (6574), eabl9551, 2021
472021
Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing
C Ludden, S Reuter, K Judge, T Gouliouris, B Blane, F Coll, P Naydenova, ...
Microbial genomics 3 (7), 2017
372017
Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the …
T Gouliouris, KE Raven, D Moradigaravand, C Ludden, F Coll, B Blane, ...
Genome research 29 (4), 626-634, 2019
352019
Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks
EM Harrison, C Ludden, HJ Brodrick, B Blane, G Brennan, D Morris, ...
Genome medicine 8 (1), 1-9, 2016
352016
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