David J Winter
David J Winter
Technical lead, pathogen genomics, ESR, New Zealand
Verified email at - Homepage
Cited by
Cited by
rotl: an R package to interact with the Open Tree of Life data
F Michonneau, JW Brown, DJ Winter
Methods in Ecology and Evolution 7 (12), 1476-1481, 2016
mmod: an R library for the calculation of population differentiation statistics
DJ Winter
Molecular Ecology Resources, 2012
rentrez: An R package for the NCBI eUtils API
DJ Winter
The R Journal 9 (2), 520-526, 2017
The stunting effect of a high CO2 ocean on calcification and development in sea urchin larvae, a synthesis from the tropics to the poles
M Byrne, M Lamare, D Winter, SA Dworjanyn, S Uthicke
Philosophical Transactions of the Royal Society B: Biological Sciences 368†…, 2013
The tuatara genome reveals ancient features of amniote evolution
NJ Gemmell, K Rutherford, S Prost, M Tollis, D Winter, JR Macey, ...
Nature 584 (7821), 403-409, 2020
Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus EpichloŽ festucae
DJ Winter, ARD Ganley, CA Young, I Liachko, CL Schardl, PY Dupont, ...
PLoS Genetics 14 (10), e1007467, 2018
Interspecific hybridization causes long‐term phylogenetic discordance between nuclear and mitochondrial genomes in freshwater fishes
GP Wallis, SR Cameron‐Christie, HL Kennedy, G Palmer, TR Sanders, ...
Molecular Ecology 26 (12), 3116-3127, 2017
Temperate reefs in a changing ocean: skeletal carbonate mineralogy of serpulids
AM Smith, MA Riedi, DJ Winter
Marine Biology 160, 2281-2294, 2013
Multigene phylogeny of the southern bull-kelp genus Durvillaea (Phaeophyceae: Fucales)
CI Fraser, DJ Winter, HG Spencer, JM Waters
Molecular Phylogenetics and Evolution 57 (3), 1301-1311, 2010
Phylomineralogy of the coralline red algae: correlation of skeletal mineralogy with molecular phylogeny
AM Smith, JE Sutherland, L Kregting, TJ Farr, DJ Winter
Phytochemistry 81, 97-108, 2012
Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia
DJ Winter, MA Pacheco, AF Vallejo, RS Schwartz, M Arevalo-Herrera, ...
PLoS neglected tropical diseases 9 (12), e0004252, 2015
Phylogenetic relationships elucidate colonization patterns in the intertidal grazers Osilinus Philippi, 1847 and Phorcus Risso, 1826 (Gastropoda: Trochidae) in the northeastern†…
KM Donald, J Preston, ST Williams, DG Reid, D Winter, R Alvarez, B Buge, ...
Molecular phylogenetics and evolution 62 (1), 35-45, 2012
Low Base-Substitution Mutation Rate in the Germline Genome of the Ciliate Tetrahymena thermophila
H Long, DJ Winter, AYC Chang, W Sung, SH Wu, M Balboa, ...
Genome biology and evolution 8 (12), 3629-3639, 2016
Risk and resilience: variations in magnesium in echinoid skeletal calcite
AM Smith, DE Clark, MD Lamare, DJ Winter, M Byrne
Marine Ecology Progress Series 561, 1-16, 2016
Analysis of EpichloŽ festucae small secreted proteins in the interaction with Lolium perenne
B Hassing, D Winter, Y Becker, CH Mesarich, CJ Eaton, B Scott
PLoS One 14 (2), e0209463, 2019
Not all sponges will thrive in a high-CO2 ocean: Review of the mineralogy of calcifying sponges
AM Smith, J Berman, MM Key Jr, DJ Winter
Palaeogeography, palaeoclimatology, palaeoecology 392, 463-472, 2013
Phylogeography of the whelk genus Cominella (Gastropoda: Buccinidae) suggests long-distance counter-current dispersal of a direct developer
KM Donald, DJ Winter, AL Ashcroft, HG Spencer
Biological journal of the Linnean Society 115 (2), 315-332, 2015
Complex epigenetic regulation of alkaloid biosynthesis and host interaction by heterochromatin protein I in a fungal endophyte-plant symbiosis
T Chujo, Y Lukito, CJ Eaton, PY Dupont, LJ Johnson, D Winter, MP Cox, ...
Fungal Genetics and Biology 125, 71-83, 2019
rentrez: Entrez in R
D Winter
R package version 0.1, 2012
Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions
SH Wu, RS Schwartz, DJ Winter, DF Conrad, RA Cartwright
Bioinformatics 33 (15), 2322-2329, 2017
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