james hadfield
james hadfield
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Nextstrain: real-time tracking of pathogen evolution
J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ...
Bioinformatics 34 (23), 4121-4123, 2018
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter-and intracontinental transmission events
VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ...
Nature genetics 47 (6), 632-639, 2015
Phandango: an interactive viewer for bacterial population genomics
J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ...
Bioinformatics, btx610, 2017
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ...
Nature genetics 48 (10), 1211-1217, 2016
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran
JS Eden, R Rockett, I Carter, H Rahman, J De Ligt, J Hadfield, M Storey, ...
Virus evolution 6 (1), veaa027, 2020
Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion
J Hadfield, SR Harris, HMB Seth-Smith, S Parmar, P Andersson, ...
Genome research 27 (7), 1220-1229, 2017
Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host
EJ Klemm, E Gkrania-Klotsas, J Hadfield, JL Forbester, SR Harris, C Hale, ...
Nature microbiology 1 (3), 1-6, 2016
Molecular characterisation of a novel cassava associated circular ssDNA virus
A Dayaram, A Opong, A Jäschke, J Hadfield, M Baschiera, RCJ Dobson, ...
Virus research 166 (1-2), 130-135, 2012
Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain
J Hadfield, AF Brito, DM Swetnam, CBF Vogels, RE Tokarz, KG Andersen, ...
PLoS pathogens 15 (10), e1008042, 2019
Molecular characterisation of dicot-infecting mastreviruses from Australia
J Hadfield, JE Thomas, MW Schwinghamer, S Kraberger, D Stainton, ...
Virus research 166 (1-2), 13-22, 2012
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages
P Andersson, SR Harris, H Smith, MB Seth, J Hadfield, C O’Neill, ...
Nature communications 7 (1), 1-11, 2016
Australian monocot-infecting mastrevirus diversity rivals that in Africa
S Kraberger, JE Thomas, ADW Geering, A Dayaram, D Stainton, ...
Virus research 169 (1), 127-136, 2012
The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology
HY Chu, M Boeckh, JA Englund, M Famulare, B Lutz, DA Nickerson, ...
BMJ open 10 (10), e037295, 2020
The role of Kenya in the trans-African spread of maize streak virus strain A
D Pande, E Madzokere, P Hartnady, S Kraberger, J Hadfield, K Rosario, ...
Virus research 232, 69-76, 2017
Modeling secondary messenger pathways in neurovascular coupling
J Hadfield, MJ Plank, T David
Bulletin of mathematical biology 75 (3), 428-443, 2013
Bromus catharticus striate mosaic virus: a new mastrevirus infecting Bromus catharticus from Australia
J Hadfield, DP Martin, D Stainton, S Kraberger, BE Owor, DN Shepherd, ...
Archives of virology 156 (2), 335-341, 2011
Evolution and rapid spread of a reassortant A (H3N2) virus that predominated the 2017–2018 influenza season
BI Potter, R Kondor, J Hadfield, J Huddleston, J Barnes, T Rowe, L Guo, ...
Virus evolution 5 (2), vez046, 2019
Paspalum striate mosaic virus: an Australian mastrevirus from Paspalum dilatatum
ADW Geering, JE Thomas, T Holton, J Hadfield, A Varsani
Archives of virology 157 (1), 193-197, 2012
Complete genome sequence of a dahlia common mosaic virus isolate from New Zealand
J Hadfield, D Linderme, DN Shepherd, M Bezuidenhout, P Lefeuvre, ...
Archives of virology 156 (12), 2297-2301, 2011
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