Yang Bai (白洋)
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
Functional overlap of the Arabidopsis leaf and root microbiota
Y Bai, DB Müller, G Srinivas, R Garrido-Oter, E Potthoff, M Rott, ...
Nature 528 (7582), 364-369, 2015
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
The plant microbiota: systems-level insights and perspectives
DB Müller, C Vogel, Y Bai, JA Vorholt
Annu. Rev. Genet 50 (1), 211-234, 2016
Core microbiomes for sustainable agroecosystems
H Toju, KG Peay, M Yamamichi, K Narisawa, K Hiruma, K Naito, S Fukuda, ...
Nature Plants 4 (5), 247-257, 2018
NRT1. 1B is associated with root microbiota composition and nitrogen use in field-grown rice
J Zhang, YX Liu, N Zhang, B Hu, T Jin, H Xu, Y Qin, P Yan, X Zhang, ...
Nature biotechnology 37 (6), 676-684, 2019
A specialized metabolic network selectively modulates Arabidopsis root microbiota
AC Huang, T Jiang, YX Liu, YC Bai, J Reed, B Qu, A Goossens, ...
Science 364 (6440), eaau6389, 2019
Root exudates drive the soil-borne legacy of aboveground pathogen infection
J Yuan, J Zhao, T Wen, M Zhao, R Li, P Goossens, Q Huang, Y Bai, ...
Microbiome 6 (1), 1-12, 2018
Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome
MJ Voges, Y Bai, P Schulze-Lefert, ES Sattely
Proceedings of the National Academy of Sciences 116 (25), 12558-12565, 2019
Expression of the Nitrate Transporter Gene OsNRT1.1A/OsNPF6.3 Confers High Yield and Early Maturation in Rice
W Wang, B Hu, D Yuan, Y Liu, R Che, Y Hu, S Ou, Y Liu, Z Zhang, ...
The Plant Cell 30 (3), 638-651, 2018
Soil pH correlates with the co-occurrence and assemblage process of diazotrophic communities in rhizosphere and bulk soils of wheat fields
K Fan, P Weisenhorn, JA Gilbert, Y Shi, Y Bai, H Chu
Soil Biology and Biochemistry 121, 185-192, 2018
A practical guide to amplicon and metagenomic analysis of microbiome data
YX Liu, Y Qin, T Chen, M Lu, X Qian, X Guo, Y Bai
Protein & cell 12 (5), 315-330, 2021
Rhizobacterial volatiles and photosynthesis‐related signals coordinate MYB72 expression in Arabidopsis roots during onset of induced systemic resistance and …
C Zamioudis, J Korteland, JA Van Pelt, M van Hamersveld, N Dombrowski, ...
The Plant Journal 84 (2), 309-322, 2015
Root microbiota shift in rice correlates with resident time in the field and developmental stage
J Zhang, N Zhang, YX Liu, X Zhang, B Hu, Y Qin, H Xu, H Wang, X Guo, ...
Science China Life Sciences 61 (6), 613-621, 2018
Variation in rhizosphere microbial communities and its association with the symbiotic efficiency of rhizobia in soybean
Q Han, Q Ma, Y Chen, B Tian, L Xu, Y Bai, W Chen, X Li
The ISME journal 14 (8), 1915-1928, 2020
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science (PeerJ Preprints)
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
Reductionist synthetic community approaches in root microbiome research
YX Liu, Y Qin, Y Bai
Current Opinion in Microbiology 49, 97-102, 2019
Taxonomic structure and functional association of foxtail millet root microbiome
T Jin, Y Wang, Y Huang, J Xu, P Zhang, N Wang, X Liu, H Chu, G Liu, ...
Gigascience, 2017
Core microbiomes for sustainable agroecosystems. Nat Plants 4: 247–257
H Toju, KG Peay, M Yamamichi, K Narisawa, K Hiruma, K Naito, S Fukuda, ...
High-throughput cultivation and identification of bacteria from the plant root microbiota
J Zhang, YX Liu, X Guo, Y Qin, R Garrido-Oter, P Schulze-Lefert, Y Bai
Nature Protocols 16 (2), 988-1012, 2021
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