Follow
Sinan U. Umu
Title
Cited by
Cited by
Year
A comprehensive profile of circulating RNAs in human serum
SU Umu, H Langseth, C Bucher-Johannessen, B Fromm, A Keller, ...
RNA biology 15 (2), 242-250, 2018
1332018
A comprehensive benchmark of RNA–RNA interaction prediction tools for all domains of life
SU Umu, PP Gardner
Bioinformatics 33 (7), 988-996, 2017
622017
MirGeneDB 2.1: toward a complete sampling of all major animal phyla
B Fromm, E Høye, D Domanska, X Zhong, E Aparicio-Puerta, ...
Nucleic Acids Research 50 (D1), D204-D210, 2022
592022
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
S Lindgreen, SU Umu, ASW Lai, H Eldai, W Liu, S McGimpsey, ...
PLoS computational biology 10 (10), e1003907, 2014
432014
Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity
TB Rounge, SU Umu, A Keller, E Meese, G Ursin, S Tretli, R Lyle, ...
Scientific reports 8 (1), 17650, 2018
352018
Avoidance of stochastic RNA interactions can be harnessed to control protein expression levels in bacteria and archaea
SU Umu, AM Poole, RCJ Dobson, PP Gardner
eLife 5, 2016
312016
Epigenome‐wide analysis of methylation changes in the sequence of gallstone disease, dysplasia, and gallbladder cancer
J Brägelmann, C Barahona Ponce, K Marcelain, S Roessler, B Goeppert, ...
Hepatology, 2020
282020
A high-resolution map of the human small non-coding transcriptome
T Fehlmann, C Backes, J Alles, U Fischer, M Hart, F Kern, H Langseth, ...
Bioinformatics 34 (10), 1621-1628, 2018
242018
TaME-seq: an efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration
S Lagström, SU Umu, M Lepistö, P Ellonen, R Meisal, IK Christiansen, ...
Scientific Reports 9 (1), 524, 2019
232019
A 10 year prediagnostic followup study shows that serum RNA signals are highly dynamic in lung carcinogenesis
SU Umu, H Langseth, A Keller, E Meese, Å Helland, R Lyle, TB Rounge
Molecular Oncology, 2019
172019
A probabilistic approach to microRNA-target binding
H Oğul, SU Umu, YY Tuncel, MS Akkaya
Biochemical and Biophysical Research Communications 413 (1), 111-115, 2011
172011
HPV16 and HPV18 type-specific APOBEC3 and integration profiles in different diagnostic categories of cervical samples
S Lagström, AH Løvestad, SU Umu, OH Ambur, M Nygård, TB Rounge, ...
Tumour Virus Research 12, 200221, 2021
142021
Serum RNAs can predict lung cancer up to 10 years prior to diagnosis
SU Umu, H Langseth, V Zuber, Å Helland, R Lyle, TB Rounge
Elife 11, e71035, 2022
122022
Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software
PP Gardner, JM Paterson, S McGimpsey, F Ashari-Ghomi, SU Umu, ...
Genome Biology, 2022
11*2022
Serum RNA Profiling in the 10-Years Period Prior to Diagnosis of Testicular Germ Cell Tumor
J Burton, SU Umu, H Langseth, T Grotmol, TK Grimsrud, TB Haugen, ...
Front Oncol 10, 574977, 2020
72020
A meta-analysis of bioinformatics software benchmarks reveals that publication-bias unduly influences software accuracy
PP Gardner, JM Paterson, FA Ghomi, SUU Umu, S McGimpsey, A Pawlik
BioRxiv, 092205, 2017
62017
RNA sequencing of hepatobiliary cancer cell lines: data and applications to mutational and transcriptomic profiling
D Scherer, M Dávila López, B Goeppert, S Abrahamsson, ...
Cancers 12 (9), 2510, 2020
52020
Accurate microRNA annotation of animal genomes using trained covariance models of curated microRNA complements in MirMachine
SU Umu, VM Paynter, H Trondsen, T Buschmann, TB Rounge, ...
Cell Genomics, 2023
42023
Identification of Circulating lncRNAs Associated with Gallbladder Cancer Risk by Tissue-Based Preselection, Cis-eQTL Validation, and Analysis of Association with Genotype-Based …
A Blandino, D Scherer, TB Rounge, SU Umu, F Boekstegers, ...
Cancers 14 (3), 634, 2022
32022
Trainer: A general-purpose trainable short biosequence classifier
H Oqul, AT Kalkan, SU Umu, MS Akkaya
Protein Pept Lett, 2013
22013
The system can't perform the operation now. Try again later.
Articles 1–20