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Sinan U. Umu
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A comprehensive profile of circulating RNAs in human serum
SU Umu, H Langseth, C Bucher-Johannessen, B Fromm, A Keller, ...
RNA biology 15 (2), 242-250, 2018
1512018
MirGeneDB 2.1: toward a complete sampling of all major animal phyla
B Fromm, E Høye, D Domanska, X Zhong, E Aparicio-Puerta, ...
Nucleic acids research 50 (D1), D204-D210, 2022
992022
A comprehensive benchmark of RNA–RNA interaction prediction tools for all domains of life
SU Umu, PP Gardner
Bioinformatics 33 (7), 988-996, 2017
692017
Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity
TB Rounge, SU Umu, A Keller, E Meese, G Ursin, S Tretli, R Lyle, ...
Scientific reports 8 (1), 17650, 2018
452018
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
S Lindgreen, SU Umu, ASW Lai, H Eldai, W Liu, S McGimpsey, ...
PLoS computational biology 10 (10), e1003907, 2014
452014
Epigenome‐wide analysis of methylation changes in the sequence of gallstone disease, dysplasia, and gallbladder cancer
J Brägelmann, C Barahona Ponce, K Marcelain, S Roessler, B Goeppert, ...
Hepatology, 2020
352020
TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration
S Lagström, SU Umu, M Lepistö, P Ellonen, R Meisal, IK Christiansen, ...
Scientific Reports 9 (1), 524, 2019
332019
Avoidance of stochastic RNA interactions can be harnessed to control protein expression levels in bacteria and archaea
SU Umu, AM Poole, RCJ Dobson, PP Gardner
eLife 5, 2016
312016
A high-resolution map of the human small non-coding transcriptome
T Fehlmann, C Backes, J Alles, U Fischer, M Hart, F Kern, H Langseth, ...
Bioinformatics 34 (10), 1621-1628, 2018
262018
Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software
PP Gardner, JM Paterson, S McGimpsey, F Ashari-Ghomi, SU Umu, ...
Genome Biology, 2022
232022
Serum RNAs can predict lung cancer up to 10 years prior to diagnosis
SU Umu, H Langseth, V Zuber, Å Helland, R Lyle, TB Rounge
Elife 11, e71035, 2022
222022
A 10 year prediagnostic followup study shows that serum RNA signals are highly dynamic in lung carcinogenesis
SU Umu, H Langseth, A Keller, E Meese, Å Helland, R Lyle, TB Rounge
Molecular Oncology, 2019
202019
HPV16 and HPV18 type-specific APOBEC3 and integration profiles in different diagnostic categories of cervical samples
S Lagström, AH Løvestad, SU Umu, OH Ambur, M Nygård, TB Rounge, ...
Tumour Virus Research 12, 200221, 2021
192021
A probabilistic approach to microRNA-target binding
H Oğul, SU Umu, YY Tuncel, MS Akkaya
Biochemical and Biophysical Research Communications 413 (1), 111-115, 2011
192011
Accurate microRNA annotation of animal genomes using trained covariance models of curated microRNA complements in MirMachine
SU Umu, VM Paynter, H Trondsen, T Buschmann, TB Rounge, ...
Cell Genomics, 2023
112023
RNA sequencing of hepatobiliary cancer cell lines: data and applications to mutational and transcriptomic profiling
D Scherer, M Dávila López, B Goeppert, S Abrahamsson, ...
Cancers 12 (9), 2510, 2020
82020
Serum RNA Profiling in the 10-Years Period Prior to Diagnosis of Testicular Germ Cell Tumor
J Burton, SU Umu, H Langseth, T Grotmol, TK Grimsrud, TB Haugen, ...
Front Oncol 10, 574977, 2020
72020
A meta-analysis of bioinformatics software benchmarks reveals that publication-bias unduly influences software accuracy
PP Gardner, JM Paterson, FA Ghomi, SUU Umu, S McGimpsey, A Pawlik
BioRxiv, 092205, 2017
62017
Identification of Circulating lncRNAs Associated with Gallbladder Cancer Risk by Tissue-Based Preselection, Cis-eQTL Validation, and Analysis of Association with Genotype-Based …
A Blandino, D Scherer, TB Rounge, SU Umu, F Boekstegers, ...
Cancers 14 (3), 634, 2022
42022
Profiling small RNAs in fecal immunochemical tests: is it possible?
E Birkeland, G Ferrero, B Pardini, SU Umu, S Tarallo, S Bulfamante, ...
Molecular Cancer 22 (1), 161, 2023
32023
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Articles 1–20