Stinus Lindgreen

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Paul P. GardnerUniversity of Otago, New ZealandVerified email at otago.ac.nz
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenVerified email at di.ku.dk
Ludovic OrlandoCentre for Anthropobiology & Genomics of Toulouse, CNRS/Univ Paul SabatierVerified email at univ-tlse3.fr
Mikkel SchubertBioinformatician (ORCID 0000-0003-2401-9921)Verified email at sund.ku.dk
Eske WillerslevCentre for GeoGenetics, University of CopenhagenVerified email at snm.ku.dk
Eric NawrockiNational Center for Biotechnology (NCBI), NLM, NIHVerified email at ncbi.nlm.nih.gov
Jennifer DaubUniversity of EdinburghVerified email at ed.ac.uk
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterVerified email at manchester.ac.uk
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
Diana L KolbeResearch Scientist, IIHG, University of IowaVerified email at uiowa.edu
Sean R. EddyHHMI & Harvard UniversityVerified email at fas.harvard.edu
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Karen L. AdairPostdoctoral researcher, University of OregonVerified email at uoregon.edu
Jakob Skou PedersenProfessor at Department of Molecular Medicine, Aarhus UniversityVerified email at ki.au.dk
Aurélien GinolhacUniversity of LuxembourgVerified email at uni.lu
Khaled A. S. Al-RasheidKing Saud UniversityVerified email at ksu.edu.sa
Eivind ValenProfessor, University of BergenVerified email at fas.harvard.edu
Robin AnderssonUniversity of CopenhagenVerified email at binf.ku.dk
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen UniversityVerified email at binf.ku.dk
M Thomas P GilbertUniversity of CopenhagenVerified email at sund.ku.dk

Stinus Lindgreen

Current Member of Parliament

Verified email at ft.dk - Homepage

High-throughput sequencing genomics metagenomics algorithmics ancient DNA


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Rfam: updates to the RNA families database PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ... Nucleic acids research 37 (suppl_1), D136-D140, 2009	892	2009
Ancient human genome sequence of an extinct Palaeo-Eskimo M Rasmussen, Y Li, S Lindgreen, JS Pedersen, A Albrechtsen, I Moltke, ... Nature 463 (7282), 757-762, 2010	856	2010
AdapterRemoval v2: rapid adapter trimming, identification, and read merging M Schubert, S Lindgreen, L Orlando BMC research notes 9 (1), 1-7, 2016	844	2016
An Aboriginal Australian genome reveals separate human dispersals into Asia M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ... Science 334 (6052), 94-98, 2011	763	2011
AdapterRemoval: easy cleaning of next-generation sequencing reads S Lindgreen BMC research notes 5 (1), 1-7, 2012	549	2012
An evaluation of the accuracy and speed of metagenome analysis tools S Lindgreen, KL Adair, P Gardner Scientific Reports 6 (19233), 2016	284	2016
Improving ancient DNA read mapping against modern reference genomes M Schubert, A Ginolhac, S Lindgreen, JF Thompson, KAS Al-Rasheid, ... BMC genomics 13 (1), 1-15, 2012	264	2012
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome JS Pedersen, E Valen, AMV Velazquez, BJ Parker, M Rasmussen, ... Genome research 24 (3), 454-466, 2014	149	2014
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing S Lindgreen, PP Gardner, A Krogh Bioinformatics 23 (24), 3304-3311, 2007	86	2007
Measuring covariation in RNA alignments: physical realism improves information measures S Lindgreen, PP Gardner, A Krogh Bioinformatics 22 (24), 2988-2995, 2006	67	2006
Adaptable probabilistic mapping of short reads using position specific scoring matrices P Kerpedjiev, J Frellsen, S Lindgreen, A Krogh BMC bioinformatics 15 (1), 1-17, 2014	50	2014
WAR: Webserver for aligning structural RNAs E Torarinsson, S Lindgreen Nucleic acids research 36 (suppl_2), W79-W84, 2008	50	2008
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling S Lindgreen, SU Umu, ASW Lai, H Eldai, W Liu, S McGimpsey, ... PLoS computational biology 10 (10), e1003907, 2014	43	2014
Nuclear Pore-Like Structures in a Compartmentalized Bacterium E Sagulenko, A Nouwens, RI Webb, K Green, B Yee, G Morgan, A Leis, ... PLOS ONE 12 (2), 2017	29	2017
Major sulfonate transporter Soa1 in Saccharomyces cerevisiae and considerable substrate diversity in its fungal family S Holt, H Kankipati, S De Graeve, G Van Zeebroeck, ... Nature communications 8 (1), 1-13, 2017	18	2017
Above and belowground community strategies respond to different global change drivers KL Adair, S Lindgreen, AM Poole, LM Young, M Bernard-Verdier, ... Scientific Reports 9 (1), 1-11, 2019	12	2019
Microsatellite records for volume 8, issue 2 D Almojil, MC Arias, RR Beasley, Y Chen, RW Clark, Y Dong, Z Dong, ... Conservation Genetics Resources 8 (2), 1-28, 2016	10	2016
SNPest: a probabilistic graphical model for estimating genotypes S Lindgreen, A Krogh, JS Pedersen BMC research notes 7 (1), 1-12, 2014	6	2014
Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts X Ren, DA Eccles, GA Greig, J Clapham, NE Wheeler, S Lindgreen, ... Msystems 2 (6), e00127-17, 2017	3	2017
Predictors and trajectories of treatment response to SSRIs in patients suffering from PTSD AK Nøhr, H Eriksson, M Hobart, I Moltke, R Buller, A Albrechtsen, ... Psychiatry research 301, 113964, 2021	2	2021

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