Stinus Lindgreen
Stinus Lindgreen
Bioinformatics Specialist, H. Lundbeck A/S
Verified email at lundbeck.com
TitleCited byYear
Rfam: updates to the RNA families database
PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ...
Nucleic acids research 37 (suppl_1), D136-D140, 2008
7402008
Ancient human genome sequence of an extinct Palaeo-Eskimo
M Rasmussen, Y Li, S Lindgreen, JS Pedersen, A Albrechtsen, I Moltke, ...
Nature 463 (7282), 757, 2010
6632010
An Aboriginal Australian genome reveals separate human dispersals into Asia
M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ...
Science 334 (6052), 94-98, 2011
5862011
AdapterRemoval: easy cleaning of next-generation sequencing reads
S Lindgreen
BMC research notes 5 (1), 337, 2012
3482012
AdapterRemoval v2: rapid adapter trimming, identification, and read merging
M Schubert, S Lindgreen, L Orlando
BMC research notes 9 (1), 88, 2016
1962016
An evaluation of the accuracy and speed of metagenome analysis tools
S Lindgreen, KL Adair, P Gardner
Scientific Reports 6 (19233), 2016
1682016
Improving ancient DNA read mapping against modern reference genomes
M Schubert, A Ginolhac, S Lindgreen, JF Thompson, KAS Al-Rasheid, ...
BMC genomics 13 (1), 178, 2012
1422012
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
JS Pedersen, E Valen, AMV Velazquez, BJ Parker, M Rasmussen, ...
Genome research 24 (3), 454-466, 2014
992014
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing
S Lindgreen, PP Gardner, A Krogh
Bioinformatics 23 (24), 3304-3311, 2007
742007
Measuring covariation in RNA alignments: physical realism improves information measures
S Lindgreen, PP Gardner, A Krogh
Bioinformatics 22 (24), 2988-2995, 2006
602006
Adaptable probabilistic mapping of short reads using position specific scoring matrices
P Kerpedjiev, J Frellsen, S Lindgreen, A Krogh
BMC bioinformatics 15 (1), 100, 2014
432014
WAR: Webserver for aligning structural RNAs
E Torarinsson, S Lindgreen
Nucleic acids research 36 (suppl_2), W79-W84, 2008
422008
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling
S Lindgreen, SU Umu, ASW Lai, H Eldai, W Liu, S McGimpsey, ...
PLoS computational biology 10 (10), e1003907, 2014
282014
Nuclear Pore-Like Structures in a Compartmentalized Bacterium
E Sagulenko, A Nouwens, RI Webb, K Green, B Yee, G Morgan, A Leis, ...
PLOS ONE 12 (2), 2017
152017
Microsatellite records for volume 8, issue 2
D Almojil, MC Arias, RR Beasley, Y Chen, RW Clark, Y Dong, Z Dong, ...
Conservation Genetics Resources 8 (2), 1-28, 2016
62016
SNPest: a probabilistic graphical model for estimating genotypes
S Lindgreen, A Krogh, JS Pedersen
BMC research notes 7 (1), 698, 2014
62014
Major sulfonate transporter Soa1 in Saccharomyces cerevisiae and considerable substrate diversity in its fungal family
S Holt, H Kankipati, S De Graeve, G Van Zeebroeck, ...
Nature Communications 8, 14247, 2017
52017
Codon evolution: Mechanisms and Models (Book review)
S Lindgreen
Trends in Evolutionary Biology 4 (1), 2012
22012
Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts
X Ren, DA Eccles, GA Greig, J Clapham, NE Wheeler, S Lindgreen, ...
MSystems 2 (6), e00127-17, 2017
12017
Deferred Path Heuristic for Phyloge-netic Trees Revisited
BK Nielsen, S Lindgreen, P Winter, M Zachariasen
Nesting Problems and Steiner Tree Problems, 163, 2007
12007
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