Stinus Lindgreen - Google Scholar Citations

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Co-authors

Paul P. GardnerUniversity of Otago, New ZealandVerified email at otago.ac.nz
Anders KroghDepartment of Biology, University of CopenhagenVerified email at binf.ku.dk
Eske WillerslevCentre for GeoGenetics, University of CopenhagenVerified email at snm.ku.dk
Mikkel SchubertBioinformatician (ORCID 0000-0003-2401-9921)Verified email at biosustain.dtu.dk
Eric NawrockiNational Center for Biotechnology (NCBI), NLM, NIHVerified email at ncbi.nlm.nih.gov
Jennifer DaubUniversity of EdinburghVerified email at ed.ac.uk
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterVerified email at manchester.ac.uk
Robert D. FinnSequence Families Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SD, UKVerified email at ebi.ac.uk
Diana L KolbeResearch Scientist, IIHG, University of IowaVerified email at uiowa.edu
Sean R. EddyHHMI & Harvard UniversityVerified email at fas.harvard.edu
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Jakob Skou PedersenProfessor at Department of Molecular Medicine, Aarhus UniversityVerified email at ki.au.dk
Aurélien GinolhacUniversity of LuxembourgVerified email at uni.lu
Khaled A. S. Al-RasheidKing Saud UniversityVerified email at ksu.edu.sa
Eivind ValenGroup Leader, University of BergenVerified email at fas.harvard.edu
Robin AnderssonUniversity of CopenhagenVerified email at binf.ku.dk
Albin SandelinProfessor, The Bioinformatics Centre, Department of Biology & BRIC, Copenhagen UniversityVerified email at binf.ku.dk
M Thomas P GilbertUniversity of CopenhagenVerified email at snm.ku.dk
Ludovic OrlandoCNRS UMR5288 & Centre for GeoGenetics, University of Copenhagen

Stinus Lindgreen

Bioinformatics Specialist, H. Lundbeck A/S

Verified email at lundbeck.com

High-throughput sequencing genomics metagenomics algorithmics ancient DNA


Title	Cited by	Year
Rfam: updates to the RNA families database PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ... Nucleic acids research 37 (suppl_1), D136-D140, 2008	740	2008
Ancient human genome sequence of an extinct Palaeo-Eskimo M Rasmussen, Y Li, S Lindgreen, JS Pedersen, A Albrechtsen, I Moltke, ... Nature 463 (7282), 757, 2010	663	2010
An Aboriginal Australian genome reveals separate human dispersals into Asia M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ... Science 334 (6052), 94-98, 2011	586	2011
AdapterRemoval: easy cleaning of next-generation sequencing reads S Lindgreen BMC research notes 5 (1), 337, 2012	348	2012
AdapterRemoval v2: rapid adapter trimming, identification, and read merging M Schubert, S Lindgreen, L Orlando BMC research notes 9 (1), 88, 2016	196	2016
An evaluation of the accuracy and speed of metagenome analysis tools S Lindgreen, KL Adair, P Gardner Scientific Reports 6 (19233), 2016	168	2016
Improving ancient DNA read mapping against modern reference genomes M Schubert, A Ginolhac, S Lindgreen, JF Thompson, KAS Al-Rasheid, ... BMC genomics 13 (1), 178, 2012	142	2012
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome JS Pedersen, E Valen, AMV Velazquez, BJ Parker, M Rasmussen, ... Genome research 24 (3), 454-466, 2014	99	2014
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing S Lindgreen, PP Gardner, A Krogh Bioinformatics 23 (24), 3304-3311, 2007	74	2007
Measuring covariation in RNA alignments: physical realism improves information measures S Lindgreen, PP Gardner, A Krogh Bioinformatics 22 (24), 2988-2995, 2006	60	2006
Adaptable probabilistic mapping of short reads using position specific scoring matrices P Kerpedjiev, J Frellsen, S Lindgreen, A Krogh BMC bioinformatics 15 (1), 100, 2014	43	2014
WAR: Webserver for aligning structural RNAs E Torarinsson, S Lindgreen Nucleic acids research 36 (suppl_2), W79-W84, 2008	42	2008
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling S Lindgreen, SU Umu, ASW Lai, H Eldai, W Liu, S McGimpsey, ... PLoS computational biology 10 (10), e1003907, 2014	28	2014
Nuclear Pore-Like Structures in a Compartmentalized Bacterium E Sagulenko, A Nouwens, RI Webb, K Green, B Yee, G Morgan, A Leis, ... PLOS ONE 12 (2), 2017	15	2017
Microsatellite records for volume 8, issue 2 D Almojil, MC Arias, RR Beasley, Y Chen, RW Clark, Y Dong, Z Dong, ... Conservation Genetics Resources 8 (2), 1-28, 2016	6	2016
SNPest: a probabilistic graphical model for estimating genotypes S Lindgreen, A Krogh, JS Pedersen BMC research notes 7 (1), 698, 2014	6	2014
Major sulfonate transporter Soa1 in Saccharomyces cerevisiae and considerable substrate diversity in its fungal family S Holt, H Kankipati, S De Graeve, G Van Zeebroeck, ... Nature Communications 8, 14247, 2017	5	2017
Codon evolution: Mechanisms and Models (Book review) S Lindgreen Trends in Evolutionary Biology 4 (1), 2012	2	2012
Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts X Ren, DA Eccles, GA Greig, J Clapham, NE Wheeler, S Lindgreen, ... MSystems 2 (6), e00127-17, 2017	1	2017
Deferred Path Heuristic for Phyloge-netic Trees Revisited BK Nielsen, S Lindgreen, P Winter, M Zachariasen Nesting Problems and Steiner Tree Problems, 163, 2007	1	2007

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