James H. Degnan
James H. Degnan
Dept. of Mathematics and Statistics, University of New Mexico
Verified email at - Homepage
Cited by
Cited by
Gene tree discordance, phylogenetic inference and the multispecies coalescent
JH Degnan, NA Rosenberg
Trends in ecology & evolution 24 (6), 332-340, 2009
Inconsistency of phylogenetic estimates from concatenated data under coalescence
LS Kubatko, JH Degnan
Systematic biology 56 (1), 17-24, 2007
Genotype, haplotype and copy-number variation in worldwide human populations
M Jakobsson, SW Scholz, P Scheet, JR Gibbs, JM VanLiere, HC Fung, ...
Nature 451 (7181), 998-1003, 2008
Discordance of species trees with their most likely gene trees
JH Degnan, NA Rosenberg
PLoS genetics 2 (5), e68, 2006
Gene tree distributions under the coalescent process
JH Degnan, LA Salter
Evolution 59 (1), 24-37, 2005
The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection
Y Yu, JH Degnan, L Nakhleh
PLoS Genet 8 (4), e1002660, 2012
Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting
Y Yu, C Than, JH Degnan, L Nakhleh
Systematic Biology 60 (2), 138-149, 2011
Properties of consensus methods for inferring species trees from gene trees
JH Degnan, M DeGiorgio, D Bryant, NA Rosenberg
Systematic Biology 58, 35-54, 2009
Comparing spatial maps of human population-genetic variation using Procrustes analysis
C Wang, ZA Szpiech, JH Degnan, M Jakobsson, TJ Pemberton, JA Hardy, ...
Statistical applications in genetics and molecular biology 9 (1), 2010
Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
ES Allman, JH Degnan, JA Rhodes
Journal of mathematical biology 62 (6), 833-862, 2011
Fast and consistent estimation of species trees using supermatrix rooted triples
M DeGiorgio, JH Degnan
Molecular Biology and Evolution 27 (3), 552-569, 2010
Anomalous unrooted gene trees
JH Degnan
Systematic Biology 62, 574-590, 2013
Modeling hybridization under the network multispecies coalescent
JH Degnan
Systematic Biology 67, 786-799, 2018
Robustness to divergence time underestimation when inferring species trees from estimated gene trees
M DeGiorgio, JH Degnan
Systematic Biology 63, 66-82, 2014
Coalescence-time distributions in a serial founder model of human evolutionary history
M DeGiorgio, JH Degnan, NA Rosenberg
Genetics 189 (2), 579-593, 2011
Species tree inference from gene splits by Unrooted STAR methods
ES Allman, JH Degnan, JA Rhodes
IEEE/ACM Transactions on Computational Biology and Bioinformatics 15, 337-342, 2018
Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent
S Zhu, JH Degnan
Systematic Biology 66, 283-298, 2017
The probability distribution of ranked gene trees on a species tree
JH Degnan, NA Rosenberg, T Stadler
Mathematical Biosciences 235, 45-55, 2012
Determining species tree topologies from clade probabilities under the coalescent
ES Allman, JH Degnan, JA Rhodes
Journal of Theoretical Biology, 96-106, 2011
Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees
S Zhu, JH Degnan, SJ Goldstien, B Eldon
BMC Bioinformatics 16, 292, 2015
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