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Nitin Kumar
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Culturing of ‘unculturable’human microbiota reveals novel taxa and extensive sporulation
HP Browne, SC Forster, BO Anonye, N Kumar, BA Neville, MD Stares, ...
Nature 533 (7604), 543-546, 2016
8992016
Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth
Y Shao, SC Forster, E Tsaliki, K Vervier, A Strang, N Simpson, N Kumar, ...
Nature 574 (7776), 117-121, 2019
4372019
A human gut bacterial genome and culture collection for improved metagenomic analyses
SC Forster, N Kumar, BO Anonye, A Almeida, E Viciani, MD Stares, ...
Nature biotechnology 37 (2), 186-192, 2019
3242019
Culturing of female bladder bacteria reveals an interconnected urogenital microbiota
K Thomas-White, SC Forster, N Kumar, M Van Kuiken, C Putonti, ...
Nature communications 9 (1), 1-7, 2018
1882018
DNA methylation and transcription patterns in intestinal epithelial cells from pediatric patients with inflammatory bowel diseases differentiate disease subtypes and associate …
KJ Howell, J Kraiczy, KM Nayak, M Gasparetto, A Ross, C Lee, TN Mak, ...
Gastroenterology 154 (3), 585-598, 2018
1672018
Whole genome sequencing of emerging multidrug resistant Candida auris isolates in India demonstrates low genetic variation
C Sharma, N Kumar, R Pandey, JF Meis, A Chowdhary
New microbes and new infections 13, 77-82, 2016
1612016
Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum
N Kumar, G Lad, E Giuntini, ME Kaye, P Udomwong, NJ Shamsani, ...
Open biology 5 (1), 140133, 2015
1372015
Lymphoid-tissue-resident commensal bacteria promote members of the IL-10 cytokine family to establish mutualism
TC Fung, NJ Bessman, MR Hepworth, N Kumar, N Shibata, D Kobuley, ...
Immunity 44 (3), 634-646, 2016
1262016
Zoonotic transfer of Clostridium difficile harboring antimicrobial resistance between farm animals and humans
CW Knetsch, N Kumar, SC Forster, TR Connor, HP Browne, C Harmanus, ...
Journal of clinical microbiology 56 (3), e01384-17, 2018
1122018
Distinct microbial and immune niches of the human colon
KR James, T Gomes, R Elmentaite, N Kumar, EL Gulliver, HW King, ...
Nature Immunology 21 (3), 343-353, 2020
1082020
Gut-educated IgA plasma cells defend the meningeal venous sinuses
Z Fitzpatrick, G Frazer, A Ferro, S Clare, N Bouladoux, J Ferdinand, ...
Nature 587 (7834), 472-476, 2020
772020
Draft Genome Sequence of a Fluconazole-Resistant Candida auris Strain from a Candidemia Patient in India
C Sharma, N Kumar, JF Meis, R Pandey, A Chowdhary
Genome announcements 3 (4), e00722-15, 2015
732015
Genome-Based Infection Tracking Reveals Dynamics of Clostridium difficile Transmission and Disease Recurrence
N Kumar, F Miyajima, M He, P Roberts, A Swale, L Ellison, D Pickard, ...
Clinical Infectious Diseases 62 (6), 746-752, 2016
702016
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes
SC Forster, HP Browne, N Kumar, M Hunt, H Denise, A Mitchell, RD Finn, ...
Nucleic acids research 44 (D1), D604-D609, 2016
592016
Population genomics of Sinorhizobium medicae based on low-coverage sequencing of sympatric isolates
X Bailly, E Giuntini, MC Sexton, RPJ Lower, PW Harrison, N Kumar, ...
The ISME Journal 5 (11), 1722-1734, 2011
452011
Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota
G Iraola, SC Forster, N Kumar, P Lehours, S Bekal, FJ García-Peña, ...
Nature Communications 8 (1), 1-8, 2017
392017
Adaptation of host transmission cycle during Clostridium difficile speciation
N Kumar, HP Browne, E Viciani, SC Forster, S Clare, K Harcourt, ...
Nature genetics 51 (9), 1315-1320, 2019
372019
Investigation of multiple resistance mechanisms in voriconazole-resistant Aspergillus flavus clinical isolates from a chest hospital surveillance in Delhi, India
C Sharma, R Kumar, N Kumar, A Masih, D Gupta, A Chowdhary
Antimicrobial Agents and Chemotherapy 62 (3), e01928-17, 2018
362018
TBrowse: an integrative genomics map of Mycobacterium tuberculosis
A Bhardwaj, D Bhartiya, N Kumar, V Scaria
Tuberculosis 89 (5), 386-387, 2009
282009
A publicly accessible database for Clostridioides difficile genome sequences supports tracing of transmission chains and epidemics
M Frentrup, Z Zhou, M Steglich, JP Meier-Kolthoff, M Göker, T Riedel, ...
Microbial genomics 6 (8), 2020
172020
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