Lung microbiota predict clinical outcomes in critically ill patients RP Dickson, MJ Schultz, T van der Poll, LR Schouten, NR Falkowski, ... American journal of respiratory and critical care medicine 201 (5), 555-563, 2020 | 214 | 2020 |
Comparing clinical features and outcomes in mechanically ventilated patients with COVID-19 and acute respiratory distress syndrome MW Sjoding, AJ Admon, AK Saha, SG Kay, CA Brown, I Co, D Claar, ... Annals of the American Thoracic Society 18 (11), 1876-1885, 2021 | 56 | 2021 |
In critically ill patients, anti-anaerobic antibiotics increase risk of adverse clinical outcomes R Chanderraj, R., Baker, J. L., Kay, S., Brown, C. A., Hinkle, K. J., Fergle ... European Respiratory Journal 61 (2), 2022 | 39* | 2022 |
Critical relevance of stochastic effects on low-bacterial-biomass 16S rRNA gene analysis JR Erb-Downward, NR Falkowski, JC D’Souza, LM McCloskey, ... MBio 11 (3), 10.1128/mbio. 00258-20, 2020 | 32 | 2020 |
Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota JM Baker, KJ Hinkle, RA McDonald, CA Brown, NR Falkowski, ... Microbiome 9 (1), 1-14, 2021 | 27 | 2021 |
The Gut Microbiome Modulates Body Temperature Both in Sepsis and Health DRP Bongers KS, Chanderraj R, Woods RJ, McDonald RA, Adame MD, Falkowski NR ... American Journal of Respiratory and Critical Care Medicine, 2022 | 18* | 2022 |
Gut Microbiota Predict Enterococcus Expansion but Not Vancomycin-Resistant Enterococcus Acquisition R Chanderraj, CA Brown, K Hinkle, N Falkowski, P Ranjan, RP Dickson, ... Msphere 5 (6), 10.1128/msphere. 00537-20, 2020 | 12 | 2020 |
Antibiotics cause metabolic changes in mice primarily through microbiome modulation rather than behavioral changes HH Bongers, K. S., McDonald, R. P., Winner, K. M., Falkowski, N. R., Brown ... PLOS ONE 17 (3), 2022 | 11 | 2022 |
The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection R Chanderraj, CA Brown, K Hinkle, N Falkowski, RJ Woods, RP Dickson Microbiome 10 (1), 2, 2022 | 9 | 2022 |
Outcomes and Predictors of Severe Hyperoxemia in Patients Receiving Mechanical Ventilation: A Single-Center Cohort Study S Tyagi, CA Brown, RP Dickson, MW Sjoding Annals of the American Thoracic Society, 2022 | 6 | 2022 |
Thermoneutrality Alters Gastrointestinal Antigen Passage Patterning and Predisposes to Oral Antigen Sensitization in Mice TK Noah, JB Lee, CA Brown, A Yamani, S Tomar, V Ganesan, ... Frontiers in immunology 12, 636198, 2021 | 6 | 2021 |
SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data HH Ranjan, P., Brown, C., Erb-Downward, J. R., & Smits Bioinformatics 38 (15), 3830-3832, 2022 | 4 | 2022 |
Contribution of the Microbiome, Environment, and Genetics to Mucosal Type 2 Immunity and Anaphylaxis in a Murine Food Allergy Model GB Stark, K. G., Falkowski, N. R., Brown, C., McDonald, R. P., & Huffnagle Frontiers In Allergy 3, 2022 | 2 | 2022 |
The microbial ecology of Candida albicans strains CHN1 and SC5314 in mice M Bazzi, K Nawrocki, C Brown, N Falkowski, K Stark, G Huffnagle Access Microbiology 3 (12), po0097, 2021 | 2 | 2021 |
Whole-tissue sampling captures biological reality of microbiome communities JM Baker, KJ Hinkle, RA McDonald, CA Brown, NR Falkowski, ... | | 2021 |
Antibiotic-Mediated Potentiation of Oxygen-Induced Lung Injury Is Preceded by Enterococcal Dominance in the Murine Gut RPD JM Baker, KJ Hinkle, CA Brown, P Ranjan, NR Falkowski, GB Huffnagle | | 2021 |