Eric Nawrocki
Eric Nawrocki
National Center for Biotechnology (NCBI), NLM, NIH
Verified email at ncbi.nlm.nih.gov
Title
Cited by
Cited by
Year
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...
The ISME journal 6 (3), 610-618, 2012
33632012
NCBI prokaryotic genome annotation pipeline
T Tatusova, M DiCuccio, A Badretdin, V Chetvernin, EP Nawrocki, ...
Nucleic acids research 44 (14), 6614-6624, 2016
19392016
Infernal 1.0: inference of RNA alignments
EP Nawrocki, DL Kolbe, SR Eddy
Bioinformatics 25 (10), 1335-1337, 2009
12532009
Infernal 1.1: 100-fold faster RNA homology searches
EP Nawrocki, SR Eddy
Bioinformatics 29 (22), 2933-2935, 2013
11012013
Rfam: updates to the RNA families database
PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ...
Nucleic acids research 37 (suppl_1), D136-D140, 2009
8142009
Rfam 12.0: updates to the RNA families database
EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ...
Nucleic acids research 43 (D1), D130-D137, 2015
7812015
Rfam 11.0: 10 years of RNA families
SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ...
Nucleic acids research 41 (D1), D226-D232, 2013
7562013
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
I Kalvari, J Argasinska, N Quinones-Olvera, EP Nawrocki, E Rivas, ...
Nucleic acids research 46 (D1), D335-D342, 2018
4402018
Rfam: Wikipedia, clans and the “decimal” release
PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ...
Nucleic acids research 39 (suppl_1), D141-D145, 2010
4342010
Query-dependent banding (QDB) for faster RNA similarity searches
EP Nawrocki, SR Eddy
PLoS Comput Biol 3 (3), e56, 2007
3142007
Structural RNA homology search and alignment using covariance models
E Nawrocki
1752009
Integrating membrane transport with male gametophyte development and function through transcriptomics
KW Bock, D Honys, JM Ward, S Padmanaban, EP Nawrocki, KD Hirschi, ...
Plant Physiology 140 (4), 1151-1168, 2006
1682006
Virus Variation Resource–improved response to emergent viral outbreaks
EL Hatcher, SA Zhdanov, Y Bao, O Blinkova, EP Nawrocki, Y Ostapchuck, ...
Nucleic acids research 45 (D1), D482-D490, 2017
1062017
Non‐coding RNA analysis using the Rfam database
I Kalvari, EP Nawrocki, J Argasinska, N Quinones‐Olvera, RD Finn, ...
Current protocols in bioinformatics 62 (1), e51, 2018
882018
RNIE: genome-wide prediction of bacterial intrinsic terminators
PP Gardner, L Barquist, A Bateman, EP Nawrocki, Z Weinberg
Nucleic acids research 39 (14), 5845-5852, 2011
622011
RNAcentral: a hub of information for non-coding RNA sequences
Nucleic acids research 47 (D1), D221-D229, 2019
562019
Annotating functional RNAs in genomes using Infernal
EP Nawrocki
RNA Sequence, Structure, and Function: Computational and Bioinformatic …, 2014
482014
Computational identification of functional RNA homologs in metagenomic data
EP Nawrocki, SR Eddy
RNA biology 10 (7), 1170-1179, 2013
342013
Identification and Characterization of a Class of MALAT1-like Genomic Loci
B Zhang, YS Mao, SD Diermeier, IV Novikova, EP Nawrocki, TA Jones, ...
Cell reports 19 (8), 1723-1738, 2017
322017
Group I introns are widespread in archaea
EP Nawrocki, TA Jones, SR Eddy
Nucleic acids research 46 (15), 7970-7976, 2018
152018
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Articles 1–20