Stephane Guindon
Stephane Guindon
CNRS, Montpellier, France
Verified email at - Homepage
Cited by
Cited by
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
S Guindon, O Gascuel
Systematic biology 52 (5), 696-704, 2003
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel
Systematic biology 59 (3), 307-321, 2010
SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
M Gouy, S Guindon, O Gascuel
Molecular biology and evolution 27 (2), 221-224, 2010
PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses
R Lanfear, B Calcott, SYW Ho, S Guindon
Molecular biology and evolution 29 (6), 1695-1701, 2012
Phylogeny. fr: robust phylogenetic analysis for the non-specialist
A Dereeper, V Guignon, G Blanc, S Audic, S Buffet, F Chevenet, ...
Nucleic acids research 36 (suppl_2), W465-W469, 2008
PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference
S Guindon, F Lethiec, P Duroux, O Gascuel
Nucleic acids research 33 (suppl_2), W557-W559, 2005
Estimating maximum likelihood phylogenies with PhyML
S Guindon, F Delsuc, JF Dufayard, O Gascuel
Bioinformatics for DNA sequence analysis, 113-137, 2009
The influence of rate heterogeneity among sites on the time dependence of molecular rates
J Soubrier, M Steel, MSY Lee, C Der Sarkissian, S Guindon, SYW Ho, ...
Molecular biology and evolution 29 (11), 3345-3358, 2012
Genomics, biogeography, and the diversification of placental mammals
DE Wildman, M Uddin, JC Opazo, G Liu, V Lefort, S Guindon, O Gascuel, ...
Proceedings of the National Academy of Sciences 104 (36), 14395-14400, 2007
Modeling the site-specific variation of selection patterns along lineages
S Guindon, AG Rodrigo, KA Dyer, JP Huelsenbeck
Proceedings of the National Academy of Sciences 101 (35), 12957-12962, 2004
Viral quasi-species evolution during hepatitis Be antigen seroconversion
SG Lim, Y Cheng, S Guindon, BL Seet, LY Lee, P Hu, S Wasser, FJ Peter, ...
Gastroenterology 133 (3), 951-958, 2007
Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications
H Shan, L Zahn, S Guindon, PK Wall, H Kong, H Ma, CW Depamphilis, ...
Molecular biology and evolution 26 (10), 2229-2244, 2009
PhyML: fast and accurate phylogeny reconstruction by maximum likelihood
S Guindon, JF Dufayard, W Hordijk, V Lefort, O Gascuel
Infection Genetics and Evolution 9 (3), 384-385, 2009
Modelling the variability of evolutionary processes
O Gascuel, S Guindon
Reconstructing evolution: new mathematical and computational advances. O …, 2007
Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk
A Kalkauskas, U Perron, Y Sun, N Goldman, G Baele, S Guindon, ...
PLOS Computational Biology 17 (1), e1008561, 2021
Intragenomic base content variation is a potential source of biases when searching for horizontally transferred genes
S Guindon, G Perriere
Molecular biology and evolution 18 (9), 1838-1840, 2001
Bayesian estimation of divergence times from large sequence alignments
S Guindon
Molecular Biology and Evolution 27 (8), 1768-1781, 2010
Performance of standard and stochastic branch-site models for detecting positive selection amongst coding sequences
A Lu, S Guindon
Molecular biology and evolution 31 (2), 484-495, 2013
Efficient biased estimation of evolutionary distances when substitution rates vary across sites
S Guindon, O Gascuel
Molecular biology and evolution 19 (4), 534-543, 2002
How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?
T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, ...
Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150420, 2015
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