| An integrated workflow for crosslinking mass spectrometry ML Mendes, L Fischer, ZA Chen, M Barbon, FJ O'Reilly, SH Giese, ... Molecular systems biology 15 (9), e8994, 2019 | 144 | 2019 |
| A study into the collision-induced dissociation (CID) behavior of cross-linked peptides SH Giese, L Fischer, J Rappsilber Molecular & Cellular Proteomics 15 (3), 1094-1104, 2016 | 87 | 2016 |
| In-search assignment of monoisotopic peaks improves the identification of cross-linked peptides S Lenz, SH Giese, L Fischer, J Rappsilber Journal of proteome research 17 (11), 3923-3931, 2018 | 39 | 2018 |
| Optimized fragmentation regime for diazirine photo-cross-linked peptides SH Giese, A Belsom, J Rappsilber Analytical chemistry 88 (16), 8239-8247, 2016 | 36 | 2016 |
| Retention time prediction using neural networks increases identifications in crosslinking mass spectrometry SH Giese, LR Sinn, F Wegner, J Rappsilber Nature communications 12 (1), 3237, 2021 | 31 | 2021 |
| Complementary benzophenone cross-linking/mass spectrometry photochemistry A Belsom, G Mudd, S Giese, M Auer, J Rappsilber Analytical chemistry 89 (10), 5319-5324, 2017 | 29 | 2017 |
| Noncovalently associated peptides observed during liquid chromatography-mass spectrometry and their effect on cross-link analyses SH Giese, A Belsom, L Sinn, L Fischer, J Rappsilber Analytical chemistry 91 (4), 2678-2685, 2019 | 23 | 2019 |
| Phosphoproteomic analysis of aurora kinase inhibition in monopolar cytokinesis AN Polat, O Karayel, SH Giese, B Harmanda, E Sanal, CK Hu, BY Renard, ... Journal of proteome research 14 (9), 4087-4098, 2015 | 17 | 2015 |
| Peptide retention in hydrophilic strong anion exchange chromatography is driven by charged and aromatic residues SH Giese, Y Ishihama, J Rappsilber Analytical chemistry 90 (7), 4635-4640, 2018 | 16 | 2018 |
| Ad hoc learning of peptide fragmentation from mass spectra enables an interpretable detection of phosphorylated and cross-linked peptides T Altenburg, SH Giese, S Wang, T Muth, BY Renard Nature Machine Intelligence 4 (4), 378-388, 2022 | 13 | 2022 |
| Specificity control for read alignments using an artificial reference genome-guided false discovery rate SH Giese, F Zickmann, BY Renard Bioinformatics 30 (1), 9-16, 2014 | 12 | 2014 |
| Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis Ö Karayel, E Şanal, SH Giese, ZC Üretmen Kagıalı, AN Polat, CK Hu, ... Scientific Reports 8 (1), 2269, 2018 | 10 | 2018 |
| Leveraging parameter dependencies in high-field asymmetric waveform ion-mobility spectrometry and size exclusion chromatography for proteome-wide cross-linking mass spectrometry LR Sinn, SH Giese, M Stuiver, J Rappsilber Analytical Chemistry 94 (11), 4627-4634, 2022 | 8 | 2022 |
| CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance A Wittig, F Miranda, M Hölzer, T Altenburg, JM Bartoszewicz, S Beyvers, ... Bioinformatics 38 (17), 4223-4225, 2022 | 7 | 2022 |
| Correction to Optimized Fragmentation Regime for Diazirine Photo-Cross-Linked Peptides SH Giese, A Belsom, J Rappsilber Analytical Chemistry 89 (6), 3802-3803, 2017 | 4 | 2017 |
| Detection of unknown amino acid substitutions using error-tolerant database search SH Giese, F Zickmann, BY Renard Statistical Analysis in Proteomics, 247-264, 2016 | 3 | 2016 |
| CovRadar: Continuously tracking and filtering SARS-CoV-2 mutations for molecular surveillance A Wittig, F Miranda, M Hölzer, T Altenburg, JM Bartoszewicz, S Beyvers, ... bioRxiv, 2021.02. 03.429146, 2021 | | 2021 |
| Computational methods and machine learning for crosslinking mass spectrometry data analysis SHJ Giese PQDT-Global, 2021 | | 2021 |
