| Variant analysis of SARS-CoV-2 genomes T Koyama, D Platt, L Parida Bulletin of the World Health Organization 98 (7), 495, 2020 | 657 | 2020 |
| Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers AR Parikh, I Leshchiner, L Elagina, L Goyal, C Levovitz, G Siravegna, ... Nature medicine 25 (9), 1415-1421, 2019 | 448 | 2019 |
| Malware phylogeny generation using permutations of code ME Karim, A Walenstein, A Lakhotia, L Parida Journal in Computer Virology 1 (1-2), 13-23, 2005 | 342 | 2005 |
| Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans P Brotherton, W Haak, J Templeton, G Brandt, J Soubrier, C Jane Adler, ... Nature communications 4 (1), 1764, 2013 | 319 | 2013 |
| The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color JC Motamayor, K Mockaitis, J Schmutz, N Haiminen, DL Iii, O Cornejo, ... Genome biology 14, 1-25, 2013 | 313 | 2013 |
| Emergence of drift variants that may affect COVID-19 vaccine development and antibody treatment T Koyama, D Weeraratne, JL Snowdon, L Parida Pathogens 9 (5), 324, 2020 | 252 | 2020 |
| Junctions: Detection, classification, and reconstruction L Parida, D Geiger, R Hummel IEEE Transactions on Pattern Analysis and Machine Intelligence 20 (7), 687-698, 1998 | 174 | 1998 |
| Geographic population structure analysis of worldwide human populations infers their biogeographical origins E Elhaik, T Tatarinova, D Chebotarev, IS Piras, C Maria Calò, A De Montis, ... Nature communications 5 (1), 3513, 2014 | 159 | 2014 |
| The lipogenic regulator SREBP2 induces transferrin in circulating melanoma cells and suppresses ferroptosis X Hong, W Roh, RJ Sullivan, KHK Wong, BS Wittner, H Guo, TD Dubash, ... Cancer discovery 11 (3), 678-695, 2021 | 152 | 2021 |
| Distinct cellular dynamics associated with response to CAR-T therapy for refractory B cell lymphoma NJ Haradhvala, MB Leick, K Maurer, SH Gohil, RC Larson, N Yao, ... Nature medicine 28 (9), 1848-1859, 2022 | 133 | 2022 |
| The emergence of pattern discovery techniques in computational biology I Rigoutsos, A Floratos, L Parida, Y Gao, D Platt Metabolic Engineering 2 (3), 159-177, 2000 | 122 | 2000 |
| Enhancing next‐generation sequencing‐guided cancer care through cognitive computing NM Patel, VV Michelini, JM Snell, S Balu, AP Hoyle, JS Parker, ... The oncologist 23 (2), 179-185, 2018 | 115 | 2018 |
| Human skin, oral, and gut microbiomes predict chronological age S Huang, N Haiminen, AP Carrieri, R Hu, L Jiang, L Parida, B Russell, ... Msystems 5 (1), 10.1128/msystems. 00630-19, 2020 | 110 | 2020 |
| Challenges in benchmarking metagenomic profilers Z Sun, S Huang, M Zhang, Q Zhu, N Haiminen, AP Carrieri, ... Nature methods 18 (6), 618-626, 2021 | 108 | 2021 |
| Paralog knockout profiling identifies DUSP4 and DUSP6 as a digenic dependence in MAPK pathway-driven cancers T Ito, MJ Young, R Li, S Jain, A Wernitznig, JM Krill-Burger, CT Lemke, ... Nature genetics 53 (12), 1664-1672, 2021 | 105 | 2021 |
| An updated tree of Y-chromosome Haplogroup O and revised phylogenetic positions of mutations P164 and PK4 S Yan, CC Wang, H Li, SL Li, L Jin European Journal of Human Genetics 19 (9), 1013-1015, 2011 | 104 | 2011 |
| Parallel genomic alterations of antigen and payload targets mediate polyclonal acquired clinical resistance to sacituzumab govitecan in triple-negative breast cancer JT Coates, S Sun, I Leshchiner, N Thimmiah, EE Martin, D McLoughlin, ... Cancer discovery 11 (10), 2436-2445, 2021 | 103 | 2021 |
| Molecular map of chronic lymphocytic leukemia and its impact on outcome BA Knisbacher, Z Lin, CK Hahn, F Nadeu, M Duran-Ferrer, KE Stevenson, ... Nature genetics 54 (11), 1664-1674, 2022 | 97 | 2022 |
| Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm L Parida, I Rigoutsos, A Floratos, D Platt, Y Gao Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms …, 2000 | 94 | 2000 |
| Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences AP Carrieri, N Haiminen, S Maudsley-Barton, LJ Gardiner, B Murphy, ... Scientific reports 11 (1), 4565, 2021 | 89 | 2021 |
