| Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems T Toni, D Welch, N Strelkowa, A Ipsen, MPH Stumpf Journal of the Royal Society Interface 6 (31), 187-202, 2009 | 1819 | 2009 |
| Simulation-based model selection for dynamical systems in systems and population biology T Toni, MPH Stumpf Bioinformatics 26 (1), 104-110, 2010 | 338 | 2010 |
| A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation J Liepe, P Kirk, S Filippi, T Toni, CP Barnes, MPH Stumpf Nature protocols 9 (2), 439-456, 2014 | 262 | 2014 |
| Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology N Joly, C Engl, G Jovanovic, M Huvet, T Toni, X Sheng, MPH Stumpf, ... FEMS microbiology reviews 34 (5), 797-827, 2010 | 252 | 2010 |
| ABC-SysBio—approximate Bayesian computation in Python with GPU support J Liepe, C Barnes, E Cule, K Erguler, P Kirk, T Toni, MPH Stumpf Bioinformatics 26 (14), 1797-1799, 2010 | 183 | 2010 |
| Model selection in systems biology depends on experimental design D Silk, PDW Kirk, CP Barnes, T Toni, MPH Stumpf PLoS computational biology 10 (6), e1003650, 2014 | 74 | 2014 |
| The evolution of the phage shock protein response system: interplay between protein function, genomic organization, and system function M Huvet, T Toni, X Sheng, T Thorne, G Jovanovic, C Engl, M Buck, ... Molecular biology and evolution 28 (3), 1141-1155, 2011 | 74 | 2011 |
| Combined model of intrinsic and extrinsic variability for computational network design with application to synthetic biology T Toni, B Tidor PLoS computational biology 9 (3), e1002960, 2013 | 65 | 2013 |
| The ABC of reverse engineering biological signalling systems M Secrier, T Toni, MPH Stumpf Molecular BioSystems 5 (12), 1925-1935, 2009 | 59 | 2009 |
| The alzheimer's disease prediction of longitudinal evolution (TADPOLE) challenge: Results after 1 year follow-up RV Marinescu, NP Oxtoby, AL Young, EE Bron, AW Toga, MW Weiner, ... arXiv preprint arXiv:2002.03419, 2020 | 57 | 2020 |
| Parameter inference for biochemical systems that undergo a Hopf bifurcation PDW Kirk, T Toni, MPH Stumpf Biophysical journal 95 (2), 540-549, 2008 | 37 | 2008 |
| Designing attractive models via automated identification of chaotic and oscillatory dynamical regimes D Silk, PDW Kirk, CP Barnes, T Toni, A Rose, S Moon, MJ Dallman, ... Nature communications 2 (1), 489, 2011 | 35 | 2011 |
| Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection T Toni, Y Ozaki, P Kirk, S Kuroda, MPH Stumpf Molecular BioSystems 8 (7), 1921-1929, 2012 | 32 | 2012 |
| From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli T Toni, G Jovanovic, M Huvet, M Buck, MPH Stumpf BMC systems biology 5, 1-16, 2011 | 26 | 2011 |
| Systems pharmacology of the NGF signaling through p75 and TrkA receptors T Toni, P Dua, PH Van Der Graaf CPT: pharmacometrics & systems pharmacology 3 (12), 1-8, 2014 | 25 | 2014 |
| Parameter inference and model selection in signaling pathway models T Toni, MPH Stumpf Computational Biology, 283-295, 2010 | 23 | 2010 |
| Model-based evolutionary analysis: the natural history of phage-shock stress response M Huvet, T Toni, H Tan, G Jovanovic, C Engl, M Buck, MPH Stumpf Biochemical Society Transactions 37 (4), 762-767, 2009 | 18 | 2009 |
| Tutorial on ABC rejection and ABC SMC for parameter estimation and model selection T Toni, MPH Stumpf arXiv preprint arXiv:0910.4472, 2009 | 13 | 2009 |
| Approximate Bayesian computation for parameter inference and model selection in systems biology T Toni Imperial College London, 2010 | 9 | 2010 |
| ABC SMC for parameter estimation and model selection with applications in systems biology T Toni Nature Precedings, 1-1, 2011 | 3 | 2011 |
