Alexie Papanicolaou

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Moran YassourThe Hebrew University of JerusalemVerified email at mail.huji.ac.il
Joshua C BowdenCSIROVerified email at csiro.au
Manfred GrabherrAssociate Professor, Inland Norway University of Applied SciencesVerified email at inn.no
Matthew Brian CougerBrigham and Women's Hospital / Harvard Medical SchoolVerified email at bwh.harvard.edu
Bo LiPrincipal Scientist, Biology Research | AI Development, gRED Computational Sciences, GenentechVerified email at gene.com
Joshua OrvisInstitute for Genome Sciences & Johns HopkinsVerified email at som.umaryland.edu
Nir FriedmanProfessor of Computer Science and Medicine, Hebrew UniversityVerified email at mail.huji.ac.il
Richard LeDucBioinformatics Platform Director, Children's Hospital Research Institute of ManitobaVerified email at chrim.ca
Matthew MacManesUniversity of New HampshireVerified email at unh.edu
Colin DeweyProfessor of Biostatistics and Medical Informatics, University of Wisconsin-MadisonVerified email at biostat.wisc.edu
Francesco StrozziiTeos TherapeuticsVerified email at iteostherapeutics.com
Brian HaasBroad InstituteVerified email at broadinstitute.org
Robert HenschelIndiana University, Technische Universität Dresden, Technical University Dresden, Dresden University of TechnologyVerified email at iu.edu
Chris D. JigginsUniversity of CambridgeVerified email at zoo.cam.ac.uk
Alisha AndersonPrinciple REsearch Scientist, CSIROVerified email at csiro.au
Wei XuAssociate Professor in Entomology, Murdoch UniversityVerified email at Murdoch.edu.au
David Andrew EcclesBioinformatics Research Analyst, Gringene BioinformaticsVerified email at gringene.org
W. Owen McMillanSmithsonian Tropical Research InstituteVerified email at si.edu
Mathieu JoronCNRS, Centre d'Ecologie Fonctionnelle et Evolutive, Université de MontpellierVerified email at cefe.cnrs.fr
Simon W. BaxterUniversity of Melbourne, BioSciencesVerified email at unimelb.edu.au

Alexie Papanicolaou

Associate Professor, Hawkesbury Institute for the Environment, Western Sydney

Verified email at westernsydney.edu.au - Homepage

genomics entomology bioinformatics


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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013	8177	2013
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species Nature 487 (7405), 94-98, 2012	1238	2012
RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design O Terenius, A Papanicolaou, JS Garbutt, I Eleftherianos, H Huvenne, ... Journal of insect physiology 57 (2), 231-245, 2011	878	2011
The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment i5K Consortium Journal of Heredity 104 (5), 595-600, 2013	372	2013
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest … SL Pearce, DF Clarke, PD East, S Elfekih, KHJ Gordon, LS Jermiin, ... BMC biology 15, 1-30, 2017	299	2017
Complex modular architecture around a simple toolkit of wing pattern genes SM Van Belleghem, P Rastas, A Papanicolaou, SH Martin, CF Arias, ... Nature ecology & evolution 1 (3), 0052, 2017	210	2017
Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta MR Kanost, EL Arrese, X Cao, YR Chen, S Chellapilla, MR Goldsmith, ... Insect biochemistry and molecular biology 76, 118-147, 2016	177	2016
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly … A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ... Genome biology 17, 1-31, 2016	167	2016
Synteny and Chromosome Evolution in the Lepidoptera: Evidence From Mapping in Heliconius melpomene EG Pringle, SW Baxter, CL Webster, A Papanicolaou, SF Lee, CD Jiggins Genetics 177 (1), 417-426, 2007	156	2007
Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity M Joron, CD Jiggins, A Papanicolaou, WO McMillan Heredity 97 (3), 157-167, 2006	150	2006
Expansion of a bitter taste receptor family in a polyphagous insect herbivore W Xu, A Papanicolaou, HJ Zhang, A Anderson Scientific Reports 6 (1), 23666, 2016	110	2016
ButterflyBase: a platform for lepidopteran genomics A Papanicolaou, S Gebauer-Jung, ML Blaxter, W Owen McMillan, ... Nucleic Acids Research 36 (suppl_1), D582-D587, 2007	106	2007
Blue: correcting sequencing errors using consensus and context P Greenfield, K Duesing, A Papanicolaou, DC Bauer Bioinformatics 30 (19), 2723-2732, 2014	100	2014
TransDecoder B Haas, A Papanicolaou, M Yassour Available from: github. com/TransDecoder/TransDecoder/wiki, 2017	96	2017
Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus L Ferguson, SF Lee, N Chamberlain, N Nadeau, M Joron, S Baxter, ... Molecular ecology 19, 240-254, 2010	93	2010
Identification and characterization of three chemosensory receptor families in the cotton bollworm Helicoverpa armigera NY Liu, W Xu, A Papanicolaou, SL Dong, A Anderson Bmc Genomics 15, 1-13, 2014	91	2014
Genomewide transcriptional signatures of migratory flight activity in a globally invasive insect pest CM Jones, A Papanicolaou, GK Mironidis, J Vontas, Y Yang, KS Lim, ... Molecular Ecology 24 (19), 4901-4911, 2015	87	2015
Next generation transcriptomes for next generation genomes using est2assembly A Papanicolaou, R Stierli, RH Ffrench-Constant, DG Heckel BMC bioinformatics 10, 1-16, 2009	78	2009
Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation HM Hines, R Papa, M Ruiz, A Papanicolaou, C Wang, HF Nijhout, ... BMC genomics 13, 1-16, 2012	72	2012
A phylogenomics approach to characterizing sensory neuron membrane proteins (SNMPs) in Lepidoptera HJ Zhang, W Xu, Q Chen, LN Sun, A Anderson, QY Xia, A Papanicolaou Insect Biochemistry and Molecular Biology 118, 103313, 2020	64	2020

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