JoŽlle Barido-Sottani
JoŽlle Barido-Sottani
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S DuchÍne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V BoškovŠ, LD Plessis, D KŁhnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2018
Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth–death process
J Barido-Sottani, G Aguirre-FernŠndez, MJ Hopkins, T Stadler, R Warnock
Proceedings of the Royal Society B 286 (1902), 20190685, 2019
A multitype birth–death model for Bayesian inference of lineage-specific birth and death rates
J Barido-Sottani, TG Vaughan, T Stadler
Systematic biology 69 (5), 973-986, 2020
RevGadgets: An R package for visualizing Bayesian phylogenetic analyses from RevBayes
CM Tribble, WA Freyman, MJ Landis, JY Lim, J Barido‐Sottani, ...
Methods in Ecology and Evolution 13 (2), 314-323, 2022
FossilSim: An r package for simulating fossil occurrence data under mechanistic models of preservation and recovery
J Barido‐Sottani, W Pett, JE O’Reilly, RCM Warnock
Methods in Ecology and Evolution 10 (6), 835-840, 2019
Ignoring fossil age uncertainty leads to inaccurate topology and divergence time estimates in time calibrated tree inference
J Barido-Sottani, NMA Van Tiel, MJ Hopkins, DF Wright, T Stadler, ...
Frontiers in Ecology and Evolution 8, 183, 2020
Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth–death model
J Barido-Sottani, TG Vaughan, T Stadler
Journal of the Royal Society Interface 15 (146), 20180512, 2018
Integrating fossil observations into phylogenetics using the fossilized birth–death model
AM Wright, DW Bapst, J Barido-Sottani, RCM Warnock
Annual Review of Ecology, Evolution, and Systematics 53, 251-273, 2022
Improved multi-type birth-death phylodynamic inference in BEAST 2
J Scire, J Barido-Sottani, D KŁhnert, TG Vaughan, T Stadler
BioRxiv, 2020.01. 06.895532, 2020
Seven rules for simulations in paleobiology
J Barido-Sottani, EE Saupe, TM Smiley, LC Soul, AM Wright, ...
Paleobiology 46 (4), 435-444, 2020
The Occurrence Birth–Death Process for combined-evidence analysis in macroevolution and epidemiology
J Andrťoletti, A Zwaans, RCM Warnock, G Aguirre-FernŠndez, ...
Systematic Biology 71 (6), 1440-1452, 2022
Robust phylodynamic analysis of genetic sequencing data from structured populations
J Scire, J Barido-Sottani, D KŁhnert, TG Vaughan, T Stadler
Viruses 14 (8), 1648, 2022
Convergent adaptation of true crabs (Decapoda: Brachyura) to a gradient of terrestrial environments
JM Wolfe, L Ballou, J Luque, VM Watson-Zink, ST Ahyong, ...
Systematic biology, syad066, 2023
Putting the F into FBD analysis: tree constraints or morphological data?
J Barido‐Sottani, A Pohle, K De Baets, D Murdock, RCM Warnock
Palaeontology 66 (6), e12679, 2023
A skyline birth-death process for inferring the population size from a reconstructed tree with occurrences
J Andrťoletti, A Zwaans, RCM Warnock, G Aguirre-FernŠndez, ...
BioRxiv, 2020.10. 27.356758, 2020
Estimating a time-calibrated phylogeny of fossil and extant taxa using RevBayes
J Barido-Sottani, JA Justison, AM Wright, RCM Warnock, W Pett, TA Heath
Phylogenetics in the genomic era, 5.2: 1--5.2: 23, 2020
Measuring similarity between gene interaction profiles
J Barido-Sottani, SD Chapman, E Kosman, AR Mushegian
BMC bioinformatics 20, 1-13, 2019
The ClaDS rate-heterogeneous birth–death prior for full phylogenetic inference in BEAST2
J Barido-Sottani, H Morlon
Systematic Biology 72 (5), 1180-1187, 2023
Estimating the age of poorly dated fossil specimens and deposits using a total-evidence approach and the fossilized birth-death process
J Barido-Sottani, D Żyła, TA Heath
Systematic Biology 72 (2), 466-475, 2023
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