Sean R. Eddy

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Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Jody ClementsPrincipal Software Engineer, Janelia Farm Research Campus, HHMIVerified email at janelia.hhmi.org
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterVerified email at manchester.ac.uk
Eric NawrockiNational Center for Biotechnology (NCBI), NLM, NIHVerified email at ncbi.nlm.nih.gov
Elena RivasMolecular and Cell Biology, Harvard UniversityVerified email at fas.harvard.edu
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Todd LoweProfessor of Biomolecular Engineering, UC Santa Cruz Genomics Institute, UCSC RNA Center, UniversityVerified email at ucsc.edu
Diana L KolbeResearch Scientist, IIHG, University of IowaVerified email at uiowa.edu
Zhirong BaoDevelopmental Biology Program, Sloan-Kettering InstituteVerified email at mskcc.org
Paul P. GardnerUniversity of Otago, New ZealandVerified email at otago.ac.nz
Fred P. DavisCelsius TherapeuticsVerified email at nih.gov
Travis WheelerAssociate Professor, Dept Computer Science, U. MontanaVerified email at traviswheeler.com
Robert KleinAssociate Professor, Genetics and Genomic Sciences, Icahn School of Medicine at Mt. SinaiVerified email at mssm.edu
Robin DowellAssociate Professor, University of Colorado BoulderVerified email at colorado.edu
Sarah BurgeDepartment of Oncology, University of CambridgeVerified email at cam.ac.uk
Christian ZmasekResearcher at J. Craig Venter InstituteVerified email at jcvi.org
Jeremy NathansProfessor of Molecular Biology and Genetics, Johns Hopkins UniversityVerified email at jhmi.edu

Sean R. Eddy

HHMI & Harvard University

Verified email at fas.harvard.edu - Homepage

Computational genomics RNA biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Initial sequencing and analysis of the human genome ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ... Macmillan Publishers Ltd., 2001	28296	2001
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence TM Lowe, SR Eddy Nucleic acids research 25 (5), 955-964, 1997	9992	1997
Initial sequencing and comparative analysis of the mouse genome RH Waterston, L Pachter Nature 420 (6915), 520-562, 2002	7905	2002
Biological sequence analysis: probabilistic models of proteins and nucleic acids R Durbin, SR Eddy, A Krogh, G Mitchison Cambridge university press, 1998	7774	1998
Profile hidden Markov models. SR Eddy Bioinformatics (Oxford, England) 14 (9), 755-763, 1998	5982	1998
Pfam: the protein families database RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt, SR Eddy, ... Nucleic acids research 42 (D1), D222-D230, 2014	5267	2014
The Pfam protein families database: towards a more sustainable future RD Finn, P Coggill, RY Eberhardt, SR Eddy, J Mistry, AL Mitchell, ... Nucleic acids research 44 (D1), D279-D285, 2016	4515	2016
The Pfam protein families database A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ... Nucleic acids research 32 (suppl_1), D138-D141, 2004	4169	2004
The Pfam protein families database M Punta, PC Coggill, RY Eberhardt, J Mistry, J Tate, C Boursnell, N Pang, ... Nucleic acids research 40 (D1), D290-D301, 2012	3972	2012
Accelerated profile HMM searches SR Eddy PLoS computational biology 7 (10), e1002195, 2011	3956	2011
HMMER web server: interactive sequence similarity searching RD Finn, J Clements, SR Eddy Nucleic acids research 39 (suppl_2), W29-W37, 2011	3887	2011
The Pfam protein families database RD Finn, J Mistry, J Tate, P Coggill, A Heger, JE Pollington, OL Gavin, ... Nucleic acids research 38 (suppl_1), D211-D222, 2009	3287	2009
The Pfam protein families database in 2019 S El-Gebali, J Mistry, A Bateman, SR Eddy, A Luciani, SC Potter, ... Nucleic acids research 47 (D1), D427-D432, 2019	3061	2019
The Pfam protein families database RD Finn, J Tate, J Mistry, PC Coggill, SJ Sammut, HR Hotz, G Ceric, ... Nucleic acids research 36 (suppl_1), D281-D288, 2007	2775	2007
The Pfam protein families database A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, ... Nucleic acids research 30 (1), 276-280, 2002	2636	2002
Pfam: clans, web tools and services RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, ... Nucleic acids research 34 (suppl_1), D247-D251, 2006	2565	2006
A uniform system for microRNA annotation V Ambros, B Bartel, DP Bartel, CB Burge, JC Carrington, X Chen, ... Rna 9 (3), 277-279, 2003	2326	2003
Non–coding RNA genes and the modern RNA world SR Eddy Nature Reviews Genetics 2 (12), 919-929, 2001	1694	2001
Genome sequence of the nematode C. elegans: a platform for investigating biology C elegans Genome Sequencing Consortium Science 282, 2012-2018, 1998	1672*	1998
Infernal 1.1: 100-fold faster RNA homology searches EP Nawrocki, SR Eddy Bioinformatics 29 (22), 2933-2935, 2013	1629	2013

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