Sean R. Eddy - Google Scholar Citations

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Citations	122272	43667
h-index	90	64
i10-index	131	108

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Co-authors

Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Robert D. FinnSequence Families Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SD, UKVerified email at ebi.ac.uk
Erik SonnhammerStockholm Bioinformatics Centre, DBB, Stockholm University, Science for Life LaboratoryVerified email at scilifelab.se
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Jody ClementsSenior Software Engineer, Janelia Farm Research Campus, HHMIVerified email at janelia.hhmi.org
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterVerified email at manchester.ac.uk
Eric NawrockiNational Center for Biotechnology (NCBI), NLM, NIHVerified email at ncbi.nlm.nih.gov
Elena RivasMolecular and Cell Biology, Harvard UniversityVerified email at fas.harvard.edu
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Todd LoweProfessor of Biomolecular Engineering, UC Santa Cruz Genomics Institute, UCSC RNA Center, UniversityVerified email at ucsc.edu
Diana L KolbeResearch Scientist, IIHG, University of IowaVerified email at uiowa.edu
Zhirong BaoDevelopmental Biology Program, Sloan-Kettering InstituteVerified email at mskcc.org
Paul P. GardnerUniversity of Otago, New ZealandVerified email at otago.ac.nz
Travis WheelerAssociate Professor, Dept Computer Science, U. MontanaVerified email at traviswheeler.com
Fred P. DavisCelsius TherapeuticsVerified email at nih.gov
Robert KleinAssociate Professor, Genetics and Genomic Sciences, Icahn School of Medicine at Mt. SinaiVerified email at mssm.edu
Robin DowellAssociate Professor, University of Colorado BoulderVerified email at colorado.edu
Sarah BurgeBabraham InstituteVerified email at babraham.ac.uk
Christian ZmasekResearcher at J. Craig Venter InstituteVerified email at jcvi.org
Jeremy NathansProfessor of Molecular Biology and Genetics, Johns Hopkins UniversityVerified email at jhmi.edu

Sean R. Eddy

HHMI & Harvard University

Verified email at fas.harvard.edu - Homepage

Computational genomics RNA biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Initial sequencing and analysis of the human genome International Human Genome Sequencing Consortium Nature 409, 860-921, 2001	24819*	2001
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence TM Lowe, SR Eddy Nucleic acids research 25 (5), 955-964, 1997	8652	1997
Biological sequence analysis: probabilistic models of proteins and nucleic acids R Durbin, SR Eddy, A Krogh, G Mitchison Cambridge university press, 1998	7154	1998
Initial sequencing and comparative analysis of the mouse genome RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, ... Nature 420 (6915), 520-562, 2002	6974	2002
Profile hidden Markov models. SR Eddy Bioinformatics (Oxford, England) 14 (9), 755-763, 1998	5341	1998
Pfam: the protein families database RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt, SR Eddy, ... Nucleic acids research 42 (D1), D222-D230, 2014	4078	2014
The Pfam protein families database A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ... Nucleic acids research 32 (suppl_1), D138-D141, 2004	3816*	2004
The Pfam protein families database M Punta, PC Coggill, RY Eberhardt, J Mistry, J Tate, C Boursnell, N Pang, ... Nucleic acids research 40 (D1), D290-D301, 2012	3561	2012
The Pfam protein families database: towards a more sustainable future RD Finn, P Coggill, RY Eberhardt, SR Eddy, J Mistry, AL Mitchell, ... Nucleic acids research 44 (D1), D279-D285, 2016	3366	2016
The Pfam protein families database RD Finn, J Mistry, J Tate, P Coggill, A Heger, JE Pollington, OL Gavin, ... Nucleic acids research 38 (suppl_1), D211-D222, 2009	3057	2009
HMMER web server: interactive sequence similarity searching RD Finn, J Clements, SR Eddy Nucleic acids research 39 (suppl_2), W29-W37, 2011	2792	2011
Accelerated profile HMM searches SR Eddy PLoS computational biology 7 (10), 2011	2553	2011
The Pfam protein families database A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, ... Nucleic acids research 30 (1), 276-280, 2002	2462	2002
The Pfam protein families database RD Finn, J Tate, J Mistry, PC Coggill, SJ Sammut, HR Hotz, G Ceric, ... Nucleic acids research 36 (suppl_1), D281-D288, 2007	2379	2007
Pfam: clans, web tools and services RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, ... Nucleic acids research 34 (suppl_1), D247-D251, 2006	2363	2006
A uniform system for microRNA annotation V Ambros, B Bartel, DP Bartel, CB Burge, JC Carrington, X Chen, ... Rna 9 (3), 277-279, 2003	2029	2003
Non–coding RNA genes and the modern RNA world SR Eddy Nature Reviews Genetics 2 (12), 919-929, 2001	1468	2001
The Pfam protein families database A Bateman, E Birney, R Durbin, SR Eddy, KL Howe, ELL Sonnhammer Nucleic acids research 28 (1), 263-266, 2000	1433	2000
Rfam: annotating non-coding RNAs in complete genomes S Griffiths-Jones, S Moxon, M Marshall, A Khanna, SR Eddy, A Bateman Nucleic acids research 33 (suppl_1), D121-D124, 2005	1323	2005
Rfam: an RNA family database S Griffiths-Jones, A Bateman, M Marshall, A Khanna, SR Eddy Nucleic acids research 31 (1), 439-441, 2003	1320	2003

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