Sean R. Eddy - Google Scholar Citations

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Co-authors

Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Robert D. FinnSequence Families Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SD, UKVerified email at ebi.ac.uk
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Erik SonnhammerStockholm Bioinformatics Centre, DBB, Stockholm University, Science for Life LaboratoryVerified email at scilifelab.se
Jody ClementsSenior Software Engineer, Janelia Farm Research Campus, HHMIVerified email at janelia.hhmi.org
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterVerified email at manchester.ac.uk
Eric NawrockiNational Center for Biotechnology (NCBI), NLM, NIHVerified email at ncbi.nlm.nih.gov
Elena RivasMolecular and Cell Biology, Harvard UniversityVerified email at fas.harvard.edu
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Todd LoweProfessor of Biomolecular Engineering, UC Santa Cruz Genomics Institute, UCSC RNA Center, UniversityVerified email at ucsc.edu
Diana L KolbeResearch Scientist, IIHG, University of IowaVerified email at uiowa.edu
Zhirong BaoDevelopmental Biology Program, Sloan-Kettering InstituteVerified email at mskcc.org
Paul P. GardnerUniversity of Otago, New ZealandVerified email at otago.ac.nz
Travis WheelerAssistant Professor, Dept Computer Science, U. MontanaVerified email at traviswheeler.com
Fred P. DavisNIAMS, National Institutes of HealthVerified email at nih.gov
Robert KleinAssociate Professor, Genetics and Genomic Sciences, Icahn School of Medicine at Mt. SinaiVerified email at mssm.edu
Robin DowellAssociate Professor, University of Colorado BoulderVerified email at colorado.edu
Christian ZmasekResearcher at J. Craig Venter InstituteVerified email at jcvi.org
Sarah BurgeBabraham InstituteVerified email at babraham.ac.uk
Jeremy NathansProfessor of Molecular Biology and Genetics, Johns Hopkins UniversityVerified email at jhmi.edu

Sean R. Eddy

HHMI & Harvard University

Verified email at fas.harvard.edu - Homepage

Computational genomics RNA biology


Title	Cited by	Year
Initial sequencing and analysis of the human genome International Human Genome Sequencing Consortium nature 409 (6822), 860, 2001	23648	2001
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence TM Lowe, SR Eddy Nucleic acids research 25 (5), 955-964, 1997	7894	1997
Biological sequence analysis: probabilistic models of proteins and nucleic acids R Durbin, SR Eddy, A Krogh, G Mitchison Cambridge university press, 1998	7007	1998
Initial sequencing and comparative analysis of the mouse genome Mouse Genome Sequencing Consortium Nature 420 (6915), 520, 2002	6619	2002
Profile hidden Markov models. SR Eddy Bioinformatics (Oxford, England) 14 (9), 755-763, 1998	4992	1998
The Pfam protein families database A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ... Nucleic acids research 32 (suppl_1), D138-D141, 2004	3673*	2004
Pfam: the protein families database RD Finn, A Bateman, J Clements, P Coggill, RY Eberhardt, SR Eddy, ... Nucleic acids research 42 (D1), D222-D230, 2013	3457	2013
The Pfam protein families database M Punta, PC Coggill, RY Eberhardt, J Mistry, J Tate, C Boursnell, N Pang, ... Nucleic acids research 40 (D1), D290-D301, 2011	3366	2011
The Pfam protein families database RD Finn, J Mistry, J Tate, P Coggill, A Heger, JE Pollington, OL Gavin, ... Nucleic acids research 38 (suppl_1), D211-D222, 2009	3030	2009
The Pfam protein families database: towards a more sustainable future RD Finn, P Coggill, RY Eberhardt, SR Eddy, J Mistry, AL Mitchell, ... Nucleic acids research 44 (D1), D279-D285, 2015	2744	2015
The Pfam protein families database RD Finn, J Tate, J Mistry, PC Coggill, SJ Sammut, HR Hotz, G Ceric, ... Nucleic acids research 36 (suppl_1), D281-D288, 2007	2465	2007
The Pfam protein families database A Bateman, E Birney, L Cerruti, R Durbin, L Etwiller, SR Eddy, ... Nucleic acids research 30 (1), 276-280, 2002	2388	2002
HMMER web server: interactive sequence similarity searching RD Finn, J Clements, SR Eddy Nucleic acids research 39 (suppl_2), W29-W37, 2011	2366	2011
Pfam: clans, web tools and services RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, ... Nucleic acids research 34 (suppl_1), D247-D251, 2006	2304	2006
Accelerated profile HMM searches SR Eddy PLoS computational biology 7 (10), e1002195, 2011	2103	2011
A uniform system for microRNA annotation V Ambros, B Bartel, DP Bartel, CB Burge, JC Carrington, X Chen, ... Rna 9 (3), 277-279, 2003	1927	2003
Non–coding RNA genes and the modern RNA world SR Eddy Nature Reviews Genetics 2 (12), 919, 2001	1404	2001
The Pfam protein families database A Bateman, E Birney, R Durbin, SR Eddy, KL Howe, ELL Sonnhammer Nucleic acids research 28 (1), 263-266, 2000	1400	2000
Pfam: a comprehensive database of protein domain families based on seed alignments ELL Sonnhammer, SR Eddy, R Durbin Proteins: Structure, Function, and Bioinformatics 28 (3), 405-420, 1997	1253	1997
Rfam: annotating non-coding RNAs in complete genomes S Griffiths-Jones, S Moxon, M Marshall, A Khanna, SR Eddy, A Bateman Nucleic acids research 33 (suppl_1), D121-D124, 2005	1239	2005

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