| ISU FLUture: a veterinary diagnostic laboratory web-based platform to monitor the temporal genetic patterns of Influenza A virus in swine MA Zeller, TK Anderson, RW Walia, AL Vincent, PC Gauger BMC bioinformatics 19, 1-10, 2018 | 49 | 2018 |
| Detection of live attenuated influenza vaccine virus and evidence of reassortment in the US swine population A Sharma, MA Zeller, G Li, KM Harmon, J Zhang, H Hoang, TK Anderson, ... Journal of Veterinary Diagnostic Investigation 32 (2), 301-311, 2020 | 47 | 2020 |
| octoFLU: automated classification for the evolutionary origin of influenza A virus gene sequences detected in US Swine J Chang, TK Anderson, MA Zeller, PC Gauger, AL Vincent Microbiology resource announcements 8 (32), 10.1128/mra. 00673-19, 2019 | 36 | 2019 |
| Antigenic evolution of H3N2 influenza A viruses in swine in the United States from 2012 to 2016 MJ Bolton, EJ Abente, D Venkatesh, JA Stratton, M Zeller, TK Anderson, ... Influenza and other respiratory viruses 13 (1), 83-90, 2019 | 30 | 2019 |
| Complete coding genome sequence of a novel porcine reproductive and respiratory syndrome virus 2 restriction fragment length polymorphism 1-4-4 lineage 1C variant identified in … G Trevisan, G Li, CAA Moura, K Coleman, P Thomas, J Zhang, P Gauger, ... Microbiology Resource Announcements 10 (21), 10.1128/mra. 00448-21, 2021 | 25 | 2021 |
| Complete genome sequences of two novel human-like H3N2 influenza A viruses, A/swine/Oklahoma/65980/2017 (H3N2) and A/Swine/Oklahoma/65260/2017 (H3N2), detected in swine in the … MA Zeller, G Li, KM Harmon, J Zhang, AL Vincent, TK Anderson, ... Microbiology Resource Announcements 7 (20), 10.1128/mra. 01203-18, 2018 | 22 | 2018 |
| Machine learning prediction and experimental validation of antigenic drift in H3 influenza A viruses in swine MA Zeller, PC Gauger, ZW Arendsee, CK Souza, AL Vincent, ... Msphere 6 (2), 10.1128/msphere. 00920-20, 2021 | 16 | 2021 |
| Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs JD Powell, EJ Abente, J Chang, CK Souza, DS Rajao, TK Anderson, ... Virology 553, 94-101, 2021 | 16 | 2021 |
| PRRSV2 genetic diversity defined by RFLP patterns in the United States from 2007 to 2019 G Trevisan, A Sharma, P Gauger, KM Harmon, J Zhang, R Main, M Zeller, ... Journal of Veterinary Diagnostic Investigation 33 (5), 920-931, 2021 | 15 | 2021 |
| Spatial and temporal coevolution of N2 neuraminidase and H1 and H3 hemagglutinin genes of influenza A virus in US swine MA Zeller, J Chang, AL Vincent, PC Gauger, TK Anderson Virus Evolution 7 (2), veab090, 2021 | 12 | 2021 |
| Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain MN Neveau, MA Zeller, BS Kaplan, CK Souza, PC Gauger, AL Vincent, ... Msphere 7 (3), e00994-21, 2022 | 9 | 2022 |
| Implementing a user‐friendly format to analyze PRRSV next‐generation sequencing results and associating breeding herd production performance with number of PRRSV strains and … G Trevisan, M Zeller, G Li, J Zhang, P Gauger, DCL Linhares Transboundary and Emerging Diseases 69 (5), e2214-e2229, 2022 | 7 | 2022 |
| Characterization of a 2016-2017 human seasonal H3 influenza a virus spillover now endemic to US swine A Sharma, MA Zeller, CK Souza, TK Anderson, AL Vincent, K Harmon, ... Msphere 7 (1), e00809-21, 2022 | 6 | 2022 |
| The genomic landscape of swine influenza A viruses in Southeast Asia MA Zeller, J Ma, FY Wong, S Tum, A Hidano, H Holt, T Chhay, S Sorn, ... Proceedings of the National Academy of Sciences 120 (33), e2301926120, 2023 | 5 | 2023 |
| Coordinated evolution between N2 neuraminidase and H1 and H3 hemagglutinin genes increased influenza A virus genetic diversity in swine MA Zeller, J Chang, AL Vincent, PC Gauger, TK Anderson BioRxiv, 2020.05. 29.123828, 2020 | 4 | 2020 |
| A recombinant porcine reproductive and respiratory syndrome virus type 2 field strain derived from two PRRSV-2-modified live virus vaccines G Trevisan, D Magstadt, A Woods, J Sparks, M Zeller, G Li, KM Krueger, ... Frontiers in Veterinary Science 10, 1149293, 2023 | 3 | 2023 |
| classLog: Logistic regression for the classification of genetic sequences MA Zeller, ZW Arendsee, GJD Smith, TK Anderson Frontiers in Virology 3, 1215012, 2023 | 1 | 2023 |
| Use of the ISU FLUture multisequence identity tool for rapid interpretation of swine influenza A virus sequences in the United States MA Zeller, A Saxena, TK Anderson, AL Vincent, PC Gauger Journal of Veterinary Diagnostic Investigation 34 (5), 874-878, 2022 | 1 | 2022 |
| Detection and Characterization of Influenza A Virus Endemic Circulation in Suckling and Nursery Pigs Originating from Vaccinated Farms in the Same Production System AS Dias, ALV Baker, RB Baker, J Zhang, MA Zeller, P Kitikoon, ... Viruses 16 (4), 626, 2024 | | 2024 |
| Phylogenetic-based methods for fine-scale classification of PRRSV-2 ORF5 sequences: a comparison of their robustness and reproducibility K VanderWaal, N Pamornchainvakul, M Kikuti, D Linhares, G Trevisan, ... bioRxiv, 2024.05. 13.593920, 2024 | | 2024 |
