| BEAST 2: a software platform for Bayesian evolutionary analysis R Bouckaert, J Heled, D Kühnert, T Vaughan, CH Wu, D Xie, MA Suchard, ... PLoS computational biology 10 (4), e1003537, 2014 | 6719 | 2014 |
| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 3506 | 2019 |
| Disability and health World Health Organization Niepełnosprawność-zagadnienia, problemy, rozwiązania, 74-78, 2020 | 910* | 2020 |
| Spread of a SARS-CoV-2 variant through Europe in the summer of 2020 EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ... Nature 595 (7869), 707-712, 2021 | 626 | 2021 |
| Phylodynamics with migration: a computational framework to quantify population structure from genomic data D Kühnert, T Stadler, TG Vaughan, AJ Drummond Molecular biology and evolution 33 (8), 2102-2116, 2016 | 173 | 2016 |
| Efficient Bayesian inference under the structured coalescent TG Vaughan, D Kühnert, A Popinga, D Welch, AJ Drummond Bioinformatics 30 (16), 2272-2279, 2014 | 157 | 2014 |
| Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth–death SIR model D Kühnert, T Stadler, TG Vaughan, AJ Drummond Journal of the Royal Society Interface 11 (94), 20131106, 2014 | 143 | 2014 |
| IcyTree: rapid browser-based visualization for phylogenetic trees and networks TG Vaughan Bioinformatics 33 (15), 2392-2394, 2017 | 123 | 2017 |
| Taming the BEAST—A community teaching material resource for BEAST 2 J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ... Systematic biology 67 (1), 170-174, 2018 | 120 | 2018 |
| A Bayesian model predicts the response of axons to molecular gradients D Mortimer, J Feldner, T Vaughan, I Vetter, Z Pujic, WJ Rosoff, K Burrage, ... Proceedings of the National Academy of Sciences 106 (25), 10296-10301, 2009 | 117 | 2009 |
| The origin and early spread of SARS-CoV-2 in Europe SA Nadeau, TG Vaughan, J Scire, JS Huisman, T Stadler Proceedings of the National Academy of Sciences 118 (9), e2012008118, 2021 | 114 | 2021 |
| Einstein-Podolsky-Rosen entanglement strategies in two-well Bose-Einstein condensates QY He, MD Reid, TG Vaughan, C Gross, M Oberthaler, PD Drummond Physical review letters 106 (12), 120405, 2011 | 106 | 2011 |
| Axon guidance by growth-rate modulation D Mortimer, Z Pujic, T Vaughan, AW Thompson, J Feldner, I Vetter, ... Proceedings of the National Academy of Sciences 107 (11), 5202-5207, 2010 | 83 | 2010 |
| Reproductive number of the COVID-19 epidemic in Switzerland with a focus on the Cantons of Basel-Stadt and Basel-Landschaft J Scire, SA Nadeau, TG Vaughan, B Gavin, S Fuchs, J Sommer, KN Koch, ... Swiss medical weekly 150 (19-20), w20271, 2020 | 81 | 2020 |
| A stochastic simulator of birth–death master equations with application to phylodynamics TG Vaughan, AJ Drummond Molecular biology and evolution 30 (6), 1480-1493, 2013 | 76 | 2013 |
| A multitype birth–death model for Bayesian inference of lineage-specific birth and death rates J Barido-Sottani, TG Vaughan, T Stadler Systematic biology 69 (5), 973-986, 2020 | 68 | 2020 |
| Estimating epidemic incidence and prevalence from genomic data TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ... Molecular Biology and Evolution, msz106, 2019 | 56 | 2019 |
| Inferring ancestral recombination graphs from bacterial genomic data TG Vaughan, D Welch, AJ Drummond, PJ Biggs, T George, NP French Genetics 205 (2), 857-870, 2017 | 53 | 2017 |
| Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses NF Müller, U Stolz, G Dudas, T Stadler, TG Vaughan Proceedings of the National Academy of Sciences 117 (29), 17104-17111, 2020 | 52 | 2020 |
| Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial C Pacioni, H Hunt, ME Allentoft, TG Vaughan, AF Wayne, A Baynes, ... Molecular Ecology 24 (23), 5813-5828, 2015 | 52 | 2015 |
Alexei J. DrummondProfessor of Computational Biology, University of AucklandVerified email at cs.auckland.ac.nz
